Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03497 ATGGGTTTGCAAAGCGAACTAAACGACGTGTCGTCGGGTTCGATTCCGCTCCTGGTCTTGGCGCAGATAGCCATGTGCGTTAACTACCTCCGCTCGATGCTCTTCGCGCTGTTGCAATCCTTAGGTCTCGCCCGATTCCACACGCACCAGATCGTCGACGACCGCTTCCTCGCCGCCGTCGGATCCGGCCTCGCCGGCCTCATCATGCTCTCCGATCAGCTCACCCTCAACAACCAATTATTCTTCTACAAAGGAGCCGCCCACGACCACTCCTGCGTGGTGTGCCAGGCCACCTTCCAGGACGGCGACCAGCTCCGCATGCTCCCCTGCCGCCACGTCTTCCACCGCCGCTGCTTCGACGGCTGGCTCCACCACTACAAGTTCAACTGTCCTCTCTGCCGCTATCCGCTCCTCTCCGACGAGCGCGTGGCCCTCACCGAACGCCGCCTCGGCCAACAACTCATCTCTTGGTTCTCCCTTCACTGA 486 0.6111 MGLQSELNDVSSGSIPLLVLAQIAMCVNYLRSMLFALLQSLGLARFHTHQIVDDRFLAAVGSGLAGLIMLSDQLTLNNQLFFYKGAAHDHSCVVCQATFQDGDQLRMLPCRHVFHRRCFDGWLHHYKFNCPLCRYPLLSDERVALTERRLGQQLISWFSLH 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03497 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 143 IPR013083 -
Vimu3g03497 161 Pfam Ring finger domain 91 134 IPR001841 -
Vimu3g03497 161 PANTHER RING ZINC FINGER PROTEIN-RELATED 86 144 - -
Vimu3g03497 161 SUPERFAMILY RING/U-box 86 140 - -
Vimu3g03497 161 SMART ring_2 92 133 IPR001841 -
Vimu3g03497 161 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03497 Vimu-Chr3 47844048 47846495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03497 1 161 C3H Transcription Factor Family AT1G15100 46.951 4.24e-46 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03497 K16282 - gmx:100803789 284.648