Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03465 ATGGGGGATCACTTTGAATTACTGGTCGATCGATTGCTTACTGAATCCACATTAGAAGCTGCAATTGAAAGCAGGAATAAGTCTATGTTGGCTGCATCCTCAGCAGTGAATGACGTGAAAATTGATCTCAATTTGATGAAAGTGGGTCTGGATGATATAAAATTTCCCGGGAAGCTGGTAGAATGCAGGATATGTCATGATGACGATGAAGATACCAATATGGAGACACCCTGCTCTTGTTGTGGTAGTTTGAAGTACGCTCACCGTAGATGTATACAACGATGGTGTAATGAGAAGGGTGACACCACCTGTGAGATATGCCACCAGCAATTCAGGCCAGGTTATACTGCTCCTCCACCACTATTTCAGTTTGGACGTATTCCAATGAGTTTCAGGGGGAATTGGGAGATTTCAAGAAGAGACTTGAATAGTACACATTTGGTTAGCATGGTCCCCACTGATCAAAACGTTAACACTTCTAACTTTGATCAGTATTCAGCCTCTGTTACAGGAAGTGTGATTTGCTGTCGTTCGATTGTTGTCATTGTAACATCTCTTGTCTCTTTTATGCATTTCATGCTTCTTCTGATTTTAAGACACACACTTCCCCTTGTAATTAGTGGAAATAAGGAGTATTATTTCCCACTCTTTTTGCTGTTGTTGTTTCGGACTGTGGGAGTTGTTCTTCCAATATATTTCATGGTTAGAGCAGTGGCATTAATCCAACGCCATCGGAGACAGCATCGAGAGCATCTTAATGCCTTGGCCATTTCATCTGACGATGAAAGCGAGCAAGCAGATTTGCAGCCTGAGCCTCAACCACATATCATACATGTACTGTAA 843 0.4199 MGDHFELLVDRLLTESTLEAAIESRNKSMLAASSAVNDVKIDLNLMKVGLDDIKFPGKLVECRICHDDDEDTNMETPCSCCGSLKYAHRRCIQRWCNEKGDTTCEICHQQFRPGYTAPPPLFQFGRIPMSFRGNWEISRRDLNSTHLVSMVPTDQNVNTSNFDQYSASVTGSVICCRSIVVIVTSLVSFMHFMLLLILRHTLPLVISGNKEYYFPLFLLLLFRTVGVVLPIYFMVRAVALIQRHRRQHREHLNALAISSDDESEQADLQPEPQPHIIHVL 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03465 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 116 IPR013083 -
Vimu3g03465 280 CDD RING_CH-C4HC3_MARCH 62 108 - -
Vimu3g03465 280 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 248 IPR033275 -
Vimu3g03465 280 SUPERFAMILY RING/U-box 61 112 - -
Vimu3g03465 280 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
Vimu3g03465 280 SMART ringv_2 61 108 IPR011016 GO:0008270
Vimu3g03465 280 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
Vimu3g03465 280 Pfam Protein of unknown function (DUF3675) 113 238 IPR022143 -
Vimu3g03465 280 FunFam Zinc finger family protein 51 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03465 Vimu-Chr3 47604468 47606250 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03465 61 112 C3H Transcription Factor Family AT2G37950 45.455 1.90e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03465 - - vun:114190540 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03465 3 47604468 47606250 Vimu3g03465 3 47604468 47606250 ECH