Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03460 ATGACGAGTCCTTTATACCTTCATGAATTTAAAAAGTTTTGGCATGTTTGCAGTTTGTCCTTCGCTTATTTTGATTCAATATGTTTACCTCCTTATGTGATTCAATTTGCAAGTAGTTCTTGTGGTGGTGAATTGGAGATAGAATCTCTCATAGGTTTGCAGCTGGATTGGTGGGGGAAATTGTGGATTGGATTGGTGGAAGGAACTGTGTTGATGCTGACGTTGGATTTGTGGGGCAAAACTGTGGTAGGCGAGTTGTGTTTATCTTGTAGGAGTTCTCCTGGCGAGAACTGTGGTACTGAGCTGTCTGTGTGTTATGGCGACATGGATCAGGATGCTCTTAAAATCCATGTATCCAGGTTTAGGTCTAGGAAGACCATGTTGATTGTCACCGACGTTGCGGCTCATGGCATCGACATTCCATTGCTTGATAATCCTAAAATATTTGTCCATCGAGTTGGAAGGGCTACAAGGGCTGGTCGGACTGGTACTGCATATTCTTTTGTGACTCCTGATGATATGGCCTACCTCTTGGATCTTCATTTGTTTCTTTCAAAACCCATCAAACCTGCTCCCACTAAGAGGAGCTCTTGCAGGATATGGATGGTACAGAGTCCTTCTGCAGAACTGGAATTGTTGCAGAGGACCTGTAAAAATGCATTTCATTTATATTCAAAAACAAAACCCTTACCTGCCAAGGAGTCCATCAGAAGAGTAATGGATTTGCCTCGTGAAGGGCTGCATCGAATGTTCATGAAGGTGTTGGAAACGGGGGAGTTAATAGCACTTGCATTTTCTGAGCATTTGAAGAAGTTTAGGCCAAAACAAACCGTTTTGGAATCCGAAGGAGAAGCTGCTAAATCAAAGCATCAACGGAATAACATTGTTGTTGTTCCCCCTCTTCCAGGGATTAAAATCAACGCTTATCTTTGGGGCGATGTGATGAAAAGGAAAAGAGCCATTCATGAGAATATTATAAATTTGGTCCACGAACAACAGCAATCTAAGGATAATAAGGAAAAGGATCTTACCAAAGAGGTCGTAGGAATTTTAGAGGCAGCAAGAAGCAGCATTCAATGCCCAATGCTCATGTGCGTTCAGAAATCAAATTCGAAAGGAAAGGCAGAAAAAGGCCAACAGGACTTCTTATATCAAAAGCAAGTCGAGGAAGGGTAA 1176 0.4218 MTSPLYLHEFKKFWHVCSLSFAYFDSICLPPYVIQFASSSCGGELEIESLIGLQLDWWGKLWIGLVEGTVLMLTLDLWGKTVVGELCLSCRSSPGENCGTELSVCYGDMDQDALKIHVSRFRSRKTMLIVTDVAAHGIDIPLLDNPKIFVHRVGRATRAGRTGTAYSFVTPDDMAYLLDLHLFLSKPIKPAPTKRSSCRIWMVQSPSAELELLQRTCKNAFHLYSKTKPLPAKESIRRVMDLPREGLHRMFMKVLETGELIALAFSEHLKKFRPKQTVLESEGEAAKSKHQRNNIVVVPPLPGIKINAYLWGDVMKRKRAIHENIINLVHEQQQSKDNKEKDLTKEVVGILEAARSSIQCPMLMCVQKSNSKGKAEKGQQDFLYQKQVEEG 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03460 391 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 99 304 - -
Vimu3g03460 391 Pfam Helicase conserved C-terminal domain 99 160 IPR001650 -
Vimu3g03460 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 192 IPR027417 -
Vimu3g03460 391 Gene3D - 86 246 IPR027417 -
Vimu3g03460 391 SMART helicmild6 89 160 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03460 Vimu-Chr3 47566587 47569153 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03460 102 194 Eukaryotic Initiation Factors Gene Family AT1G72730 33.981 5.84e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03460 K14808 - gmx:100817417 334.339