Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03433 ATGGATTCAGTGCCTGTTAATGTGTCTAATTCACATCCTATCAAAGATCCACCCACTTCTTCTCCTGCTAAAGAGCGTGATGGGCAAGCTTCTGCTGCTTCAGTTTCTGAGCAAGATAATTCAGCACATGAGACACCTTCTATGTCATCCCCACCAGGCATATCGTCTTGGGCCAAAAGCTTGAAAATTTCTCAGTCATTTTCTCGCTCCCAAGATGACTCATCAGGTGGAAATGTTGAGAAATCAACTTTTGCACGTTTCACTAGTAATCTGGGATTGAGGTTGTCTCCAAAGTCTCCTGTATCAGATGACAGTTCCAATGAAACTGCTGTACAATCTAATTTGTTTGGAAGCATTACGAAAGGCCTGGTTGACACTTCTAAGAATGCTGTGAAAGCTGTGCAGGTTAAGGCACGCCATGTTGTTTCGCAGAATAAACGCAGATATCAGGAAGGAGGTTTTGATTTAGATATGACATATATCACTGAGAACATCATTGCAATGGGATTCCCTGCTGGTGACATGAGCTCTGGGTTTTTCGGATATGTTGAAGGATTTTACAGAAATCATATGGAAGAAGTAATTAAGTTTTTTGAAACTCACCATAAGGTAGGGAACTTGTTTGCTCTTGGATATGATTTGGATTTCCCGGGCCCTTTATTGTGCTCACATTTCTACAACAAAAGGTTGTTTCGCCCTAAAACCTCCCTTTTGTGGCTTACTGTTGTTGTTCAGTTTTTCTTGGGGCTTTTGTGTGGATGTCGTCTAAAACTTCTTTGTTTACCGCAGTTTACCCAACAGGATAAATACAAGGTTTATAATCTCTGTTCTGAGCGGTTGTACGATGCATCGTTGTTTGAGGGGAAGGTGGCTAGCTTCCCTTTTGATGACCACAATTGCCCGCCAATTCAACTGATTATATCCTTCTGTCAAAGTGCTTACTCATGGTTGAAACAAGATATTGAGAATGTTGTGGTTGTCCACTGCAAGGCTGGAATGGCTAGGACAGGATTGATGATATCTAGTCTTCTATTATTCTTAAAGTTCTTCCCAACTGCTGAGGAGTCGATGGATTACTATAATCAAAAAAGATGTGTTGATGGAAAGGGACTTGTTCTGCCGAGTCAGATTAGGTATGTCAAATATTTTGAACGAGTCTTAACTTACTTCAATGGCGAAAACCCTCCTGCCCGCAGGTGCATGCTTAGGGGATTCCGGCTTCACAGATGCCCTTACTGGATTAGGCCCTCCGTAACTGTCTCAGATCATAGTGGTGTGTTGTTCTCAACCAAAAAGCATCCGCGAACCAAGGATCTTTTGCCAGAAGATTTTTGGTTCAGTGCACCAAAGAAGGGAGTGATGGTATTTGCTTTGCCAGGAGAGCCCGGTCTTACAGAGTTGTCTGGGGACTTCAAAATTCATTTTCATGATCGCCAAGGAGATTTTTACTGTTGGTTGAACACAAATATGACCGAAAATAGAAAAGTATTGAACACTGGTGATCTTGATGGCTTTGACAAGAGAAAATTACCTTCTCCAGGATTTATGGTTGAGGTTGTGCTCGTGGACCATAATGCCAATGTAGTAACTTCGCAACCTAAAACTACTACAACGAAATCAGATGAGAGTTCAAGTAACAGTCCTACTGGTCCTGCGCCAGTGGAAAGGAGCACCCCTTCACAGAATGCAGTCAAAGAATCGGAGAGTCGCAATGATAAAGAAGATGATGTGTTTTCAGATGGCGAGGCAGAACAATCTGCTTCTTCAACAACCAAGCAAAAAAACGCACCTTCTGAAGCAGTTGAAACTGTTAAAAATGATACCAGAGGCTCCGACTCCGACAGAATTTCAAATGAAATTGCAAACTTATCGCATGCAACAGAGCAAGTTTCTTTGGGAAACAAGAGCTCCTCCACGTCAATTCATCACGCTAGTGAGCCAAGAAGTAATGTTGACGGTAAAACTGTGTCCAGTATCCAGGCGCCCAGTGCAGAAAGTGAGTTTAAGGCCATGGCTGCAGATGCTTCTGTTTTTACCTTTGGAGATGACGAAGACTACGAAAGTGATTGA 2070 0.4246 MDSVPVNVSNSHPIKDPPTSSPAKERDGQASAASVSEQDNSAHETPSMSSPPGISSWAKSLKISQSFSRSQDDSSGGNVEKSTFARFTSNLGLRLSPKSPVSDDSSNETAVQSNLFGSITKGLVDTSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKVGNLFALGYDLDFPGPLLCSHFYNKRLFRPKTSLLWLTVVVQFFLGLLCGCRLKLLCLPQFTQQDKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLIISFCQSAYSWLKQDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESMDYYNQKRCVDGKGLVLPSQIRYVKYFERVLTYFNGENPPARRCMLRGFRLHRCPYWIRPSVTVSDHSGVLFSTKKHPRTKDLLPEDFWFSAPKKGVMVFALPGEPGLTELSGDFKIHFHDRQGDFYCWLNTNMTENRKVLNTGDLDGFDKRKLPSPGFMVEVVLVDHNANVVTSQPKTTTTKSDESSSNSPTGPAPVERSTPSQNAVKESESRNDKEDDVFSDGEAEQSASSTTKQKNAPSEAVETVKNDTRGSDSDRISNEIANLSHATEQVSLGNKSSSTSIHHASEPRSNVDGKTVSSIQAPSAESEFKAMAADASVFTFGDDEDYESD 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03433 689 MobiDBLite consensus disorder prediction 530 565 - -
Vimu3g03433 689 MobiDBLite consensus disorder prediction 1 17 - -
Vimu3g03433 689 ProSitePatterns Tyrosine specific protein phosphatases active site. 327 337 IPR016130 GO:0016311|GO:0016791
Vimu3g03433 689 Gene3D Protein tyrosine phosphatase superfamily 259 397 IPR029021 -
Vimu3g03433 689 MobiDBLite consensus disorder prediction 24 56 - -
Vimu3g03433 689 MobiDBLite consensus disorder prediction 1 56 - -
Vimu3g03433 689 Gene3D Protein tyrosine phosphatase superfamily 132 227 IPR029021 -
Vimu3g03433 689 MobiDBLite consensus disorder prediction 530 662 - -
Vimu3g03433 689 ProSiteProfiles Phosphatase tensin-type domain profile. 147 390 IPR029023 -
Vimu3g03433 689 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 259 387 IPR029021 -
Vimu3g03433 689 SMART PTEN_C2_2 395 523 IPR014020 -
Vimu3g03433 689 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 267 658 - -
Vimu3g03433 689 MobiDBLite consensus disorder prediction 615 662 - -
Vimu3g03433 689 CDD PTP_PTEN 157 385 IPR045101 GO:0016791
Vimu3g03433 689 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 304 364 IPR000387 GO:0016311|GO:0016791
Vimu3g03433 689 MobiDBLite consensus disorder prediction 582 604 - -
Vimu3g03433 689 ProSiteProfiles C2 tensin-type domain profile. 397 524 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03433 Vimu-Chr3 47392623 47399283 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03433 33 689 Protein tyrosine phosphatase (PTP) family AT3G19420 59.427 0.0 757
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03433 K01110 - gmx:100784003 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03433 3 47392623 47399283 Vimu3g03433 3 47392623 47399283 ECH
Vimu7g02787 7 23436753 23451978 Vimu3g03433 3 47392623 47399283 PCT