Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03428 ATGCCTCAGATGGACATGAAAGGAGGGAAAGACAGTGAGAGAGGGAAGAAAGGTGCTGTCTTCCAGTACGGGGAGGCCAAAATCCTGGGTTCGTTCGTATCCATATTAGGTGCACTCGTAGTTTTACTCTATAAGGGTTCCATAATCCTTTCAACTTCATCTCCTACGTTTCGTTCTCCAATGGAATCTACATCACAAACAAATTGGATTCTTGGTGGATCCCTACTTGCCATTGAGTATCTTTTGGTTCCAATCTGGTACATTGTTCAAGTATTAAACACACTCACAAAGACTAAAACAAAAAGACATTTATTACAGAAAAGAAATACTAAGTACAATTTATGCTGCTTGGAAACAGACCGATATTATCAAACAATACCCATCAGAGTTTATTATGGTGTTCCTTTACAACCTGGGACTCTGATATCTGCTCCAATTTGCTTGCTATTAGAAGAAAATTTGAGTGCTTGGAAGATAAATCCTGATGTAACATTGGTGGCTATTGTATATTCGGTGAGAAGATAA 525 0.3848 MPQMDMKGGKDSERGKKGAVFQYGEAKILGSFVSILGALVVLLYKGSIILSTSSPTFRSPMESTSQTNWILGGSLLAIEYLLVPIWYIVQVLNTLTKTKTKRHLLQKRNTKYNLCCLETDRYYQTIPIRVYYGVPLQPGTLISAPICLLLEENLSAWKINPDVTLVAIVYSVRR 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03428 174 PANTHER WAT1-RELATED PROTEIN 23 171 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03428 Vimu-Chr3 47356572 47359115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03428 25 171 Nodulin-like Gene Family AT5G40240 37.255 6.67e-22 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03428 - - gmx:100805667 137.502