Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03424 ATGGCGACGTTTTCAATTGGGACACACTTGTCCATGTTCCAGAATTTGCGCACCTCCAAACTTCCCCTCCATGGTCTGTGCACTGTTGAACCTTCGCCCTTCTTTGGCTCTTCTTCTGGCAGAACCAGATTAACGGGTACAATTCCCACTTTGCTCCGTCACAATGTATTGGCACGTGCTGAAGATAAGGCCAGGGATCCTACATCTTCTTCGTTTCAGACTCAACAAAGTCCACAGTCACAGAATTTGACACCGGAATCTGGAAGTTGCGATCCCCTCTGTTCACTCGATGAAACAACCTCGCAAGAGTTTGAAGAAAGCTACCAGCCTAAGACTGATTCGCTCAAAGCTGTAGCAATATTAGGAGCAGCTGCAACTGGGGCAGTGGCAATTAACCATTCTTGGGTGGCCACCAATCAGGATCTTGCTATGGCTTTGCTATTTGTACTAGGATATGCAGGGATCATTTTTGAAGAATCTCTAGCCTTCAATAAAAGTGGCGTGGGACTGGTGATGGCTGTAGGCTTATGGGTGATACGGAGTCTAGGGGCTCCTTCAACTGATATAGCTGTTTCAGAGCTTACACATGCATCTGCGGAAGTCAGTGAAATAGTATTTTTCTTGCTTGGTGCAATGACCATAGTTGAGATTATTGATTCTCATCAAGGATTTAAGCTGGTTACGGACAATATAACAACCCGAAATCCACGCCTCCTCCTCTGGGTGATTGGATTTGTTACGTTTTTTCTCAGTGCAGTTCTAGACAACCTTACATCTACCATAGTTATGGTTTCCCTATTGCGGAAATTAGTACCTCCATCTGAATACCGAAAGATTCTTGGAGCTGTTGTTGTAATATCAGCAAATGCCGGGGGTGCATGGACTCCTATTGGTGATGTTACAACTACTATGCTGTGGATACATGGCCAAATATCCACAGTTCAAACAATTAAGGGTTTATTTGTACCTTCAGCAGTTTCTCTGGCTGTTCCACTGGCTCTAATGTCTCTGACTAGCGAAGTTAACGGGAAGGGACAAAATTCTCCCAATGTCTTGGCATCTGAACAAATTGCTCCTCGAGGACAGCTTGTTTTCTCAGTTGGTTTAGGAGTTTTGATTTTTGTCCCAGTCTTCAAGGCACTAACAGGTTTGCCTCCTTACATGGGAATGCTGCTGGGACTCGGTGTGCTTTGGATCCTCACAGATGCAATCCATTACGGAGAATCTGAAAGGCAGAAGCTAAAAGTACCACAGGCTCTCTCAAGGATAGACACTCAAGGAATACTATTCTTCCTGGGAATTCTATTGTCCGTTGGCAGCTTGGAGGCAGCAGGGATTCTTCGAGAAATAGCAAATTACCTTGATGCACATGTTGCTAGCACTGAACTGATTGCAAGTTCTATTGGTCTCATATCTGCAGTAATAGACAATGTACCATTGGTTGCTGCAACAATGGGAATGTATGATGTCGTCTCTTTCCCTCAAGATTCTGAGTTCTGGCAATTGATTGCATTTTGTGCCGGAACTGGAGGTTCCATGTTAATTATTGGCTCAGCTGCCGGAGTTGCGTTCATGGGGATGGAAAAGGTGGACTTCTTTTGGTACTTACGAAAGATTAGTGGCTTTGCTTTTGCAGGTTATGCTGCTGGTATTGTTGCCTATCTAGCACTTTATAAACTCAACATCTCCCTACCAACTCTAGCAGAGGTTCCTTTCCTCTCTGGTTCATAA 1731 0.4454 MATFSIGTHLSMFQNLRTSKLPLHGLCTVEPSPFFGSSSGRTRLTGTIPTLLRHNVLARAEDKARDPTSSSFQTQQSPQSQNLTPESGSCDPLCSLDETTSQEFEESYQPKTDSLKAVAILGAAATGAVAINHSWVATNQDLAMALLFVLGYAGIIFEESLAFNKSGVGLVMAVGLWVIRSLGAPSTDIAVSELTHASAEVSEIVFFLLGAMTIVEIIDSHQGFKLVTDNITTRNPRLLLWVIGFVTFFLSAVLDNLTSTIVMVSLLRKLVPPSEYRKILGAVVVISANAGGAWTPIGDVTTTMLWIHGQISTVQTIKGLFVPSAVSLAVPLALMSLTSEVNGKGQNSPNVLASEQIAPRGQLVFSVGLGVLIFVPVFKALTGLPPYMGMLLGLGVLWILTDAIHYGESERQKLKVPQALSRIDTQGILFFLGILLSVGSLEAAGILREIANYLDAHVASTELIASSIGLISAVIDNVPLVAATMGMYDVVSFPQDSEFWQLIAFCAGTGGSMLIIGSAAGVAFMGMEKVDFFWYLRKISGFAFAGYAAGIVAYLALYKLNISLPTLAEVPFLSGS 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03424 576 PANTHER SODIUM/PROTON ANTIPORTER 1-RELATED 53 576 IPR045016 GO:0006814|GO:0015297
Vimu3g03424 576 MobiDBLite consensus disorder prediction 67 96 - -
Vimu3g03424 576 Pfam Citrate transporter 154 508 IPR004680 GO:0016020|GO:0055085
Vimu3g03424 576 NCBIfam sodium:proton antiporter NhaD 169 399 - -
Vimu3g03424 576 MobiDBLite consensus disorder prediction 63 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03424 Vimu-Chr3 47336325 47341559 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03424 1 576 Antiporters AT3G19490 74.099 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03424 - - gmx:100779521 1008.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03424 3 47336325 47341559 Vimu3g03424 3 47336325 47341559 ECH