Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03409 ATGGTGCTTGCTGAGTTGTTGGCTAGTCCAGCTTTATATGCACACACATCTTCCCAGAATAACTCACCAACAAATTCCAATCCCACTTCTCCATTTTTCTTCAGTGTTAAAACCCTCTTCAAGAACAATAATTATTATTACAAAATGGGTAGCCTTGAAGAGGAAAGAACAACTGTAGGATGGGCAGCTAGAGACCCTTCTGGGATTCTCTCCCCATACACCTACAATCTAAGAAACACTGGCCCTGATGATGTTTACATCAAAGTTCACTACTGTGGAATTTGCCACTCTGATCTCCACCAGATTAAAAACGATCTTGGCATGTCCAATTACCCCATGGTCCCCGGACACGAAGTGGTTGGTGAGGTACTGGAGGTGGGGTCAAACGTTAGCAGGTTCGGAGTTGGTGAAGTGGTTGGAGTTGGACTTCTCGTAGGTTGCTGCAAAAACTGCGGGCCATGCCACTCAGACATTGAGCAGTACTGCAGCAAGAAAATTTGGTCTTACAATGATGTTTATGTGGATGGAAAGCCCACTCAGGGTGGCTTTGCAGAAACCATGATCGTCGAGCAAAAGTTTGTGGTGAAAATCCCAGAGGGTTTGGCGCCAGAGCAAGCTGCACCATTGTTGTGTGCTGGTGTGACTGTGTACAGTCCACTGTCGCATTTTGGGTTGAAAGAAAGAGGGTTGAGGGGTGGAATATTGGGGCTTGGAGGAGTGGGACACATGGGGGTGAAGATAGCAAAGGCATTTGGTCACCATGTGACTGTGATAAGTTCTTCTGACAAGAAGAAACAGGAGGCACTTGAACATCTTGGAGCTGATCAATATCTTGTTAGCTCTGATGCCACTGCTATGCAGGAAGCTGCTGATTCACTCGACTACATCATTGACACTGTGCCTGTTGGTCATCCTCTCGAGCCTTATCTCTCCTTGCTCAAACTTGATGGCAAGTTGATCTTGATGGGGGTCATCAACACCCCTCTGCAATTTGTTAGCCCCATGGTCATGCTAGGAAGGAAATCAATAACAGGAAGTTTCATTGGGAGCATGAAGGAGACAGAGGAGATGTTGGAGTTCTGGAAAGAGAAGGAACTGAGCTCTATGATTGAAGTGGTGAACATGGATTACATTAACAAGGCTTTTGAAAGGTTGGAGAAGAACGATGTGAGATACAGGTTTGTTGTGGATGTTAAAGGGAGTAAATTTGAACAGTAA 1218 0.4548 MVLAELLASPALYAHTSSQNNSPTNSNPTSPFFFSVKTLFKNNNYYYKMGSLEEERTTVGWAARDPSGILSPYTYNLRNTGPDDVYIKVHYCGICHSDLHQIKNDLGMSNYPMVPGHEVVGEVLEVGSNVSRFGVGEVVGVGLLVGCCKNCGPCHSDIEQYCSKKIWSYNDVYVDGKPTQGGFAETMIVEQKFVVKIPEGLAPEQAAPLLCAGVTVYSPLSHFGLKERGLRGGILGLGGVGHMGVKIAKAFGHHVTVISSSDKKKQEALEHLGADQYLVSSDATAMQEAADSLDYIIDTVPVGHPLEPYLSLLKLDGKLILMGVINTPLQFVSPMVMLGRKSITGSFIGSMKETEEMLEFWKEKELSSMIEVVNMDYINKAFERLEKNDVRYRFVVDVKGSKFEQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03409 405 SUPERFAMILY GroES-like 64 229 IPR011032 -
Vimu3g03409 405 FunFam probable cinnamyl alcohol dehydrogenase 61 218 - -
Vimu3g03409 405 Gene3D - 61 398 - -
Vimu3g03409 405 FunFam Cinnamyl alcohol dehydrogenase 212 368 - -
Vimu3g03409 405 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 116 130 IPR002328 GO:0008270|GO:0016491
Vimu3g03409 405 SMART PKS_ER_names_mod 68 396 IPR020843 GO:0016491
Vimu3g03409 405 CDD CAD1 59 397 IPR047109 GO:0016616
Vimu3g03409 405 FunFam Putative cinnamyl alcohol dehydrogenase 6 369 398 - -
Vimu3g03409 405 Gene3D - 212 368 - -
Vimu3g03409 405 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 202 366 IPR036291 -
Vimu3g03409 405 PANTHER ALDEHYDE REDUCTASE 53 400 IPR047109 GO:0016616
Vimu3g03409 405 Pfam Alcohol dehydrogenase GroES-like domain 82 197 IPR013154 -
Vimu3g03409 405 Pfam Zinc-binding dehydrogenase 239 360 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03409 Vimu-Chr3 47237511 47239138 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03409 49 403 Monolignol Biosynthesis Gene Families AT3G19450 78.933 0.0 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03409 K00083 - gmx:100777558 636.721