Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03402 ATGACAGAAACCAAACGTAGGTGGTACCGAACCCAGCGTAGACAGGCCAGAAACAAACACAACACAAAAAAGAAGTGCACCCCGGTCCTTAAGGTCCCATGGCCTCATCTTATTGTCTCGTTGCGTTTTGATAAGGAATTCCATAAGAAACTTTCCCAATATGTTACATCACCCAAGGAAATCATGAACCTTAATTTTCAGAATCTCCATTTGTTGTGGAGGCTCTCATCCTTTCTTCTTCTACTTCTTCAGTCTGCTACATCTCAGTCAGTTACATCTCTTAACTCTGATGGGATTCTCCTGCTAAAATTCAAATACTCCATCCTCAGCGACCCTTTGTCAGTCCTAGAAAGTTGGAACTACGATGATGCAACACCATGTTCATGGTATGGTGTTACGTGCGACCAAATTGGAGCCCCCGGTACCCCTGATTTGTTCAGAGTAACCAGTTTGACACTTCCCAATAGCCAACTTTTGGGTTCCATTTCTGAGGACTTGGGCTTGATCCAATACCTTCGCCACATCGATCTCTCCAACAATTTCCTTAATGGCTCTCTACCCAACACTATCTTCAACTCTTCCCAGCTTCAAGTACTTTCTCTCTCAAACAATGTTATCTCGGGTCAACTAAATCAGCTGGTTGGAAAACTAACAAACCTTAAAGTTCTCAATCTCTCTGATAATGCCTTTGCCGGGTTGATCCCAGAAAACCTCACTACTCTACCAAACTTAACCGTTGTTTCTCTGAAGAGTAACTACTTCTCTGGTAGTGTCCCAACCGGGTTCAAGTACGTGGAGCTTCTGGATCTGTCCTCCAATTTGTTAAACGGTTCTTTGCCAGAAGACTTTGGCGGCGAAAGCTTACGCTACATGAACCTCTCTTACAACAAGATTTCGGGAACAATTCCTCCAACATTCGCCAAACAGATTCCTGGAAACTCAACGGTGGACCTTTCGTTCAATAATCTGACAGGGCCGATACCAGAGTCTTTGGCTTTGCTCAACGAGAAGACAGAGTTCCTATCAGGAAATGCTGATCTTTGTGGTAAGCCTCTGAAGATTATGTGTACAGTTCCCTCTACTGAGTCCACTGCTCCGCCCAACGTCACCACCTCTTCACCAGCCATTGCTGCCATACCGAAAATTGACTCAAACCCTTCAACAAACACAACAGGAACCCCCACCAGTTCTCAGAATATATCACCAAGTGGCCTAAAACCTGCCACCATAGCAGCAATTGTGGTGGGAGACTTGGCTGGCATGGCACTTTTGGCCCTCGTTATTCTCTTGGTCTACCAACAGAGAAAGAAAAGATATTCGGATCCAAATACAAATTCAACACGAGACACTAATGCTGCTTCTGGTAACAACTCGGAAAAGAAATACCAAACTGTTTCACGACAAGATGCAGATGCAAAAACAGTAACTCCTTCACTTCCTTGTTCCTGCTTAACAATCAAAGAAGAAGAAACCTCAGAGGCAACTAGCTCCGACAGTGACCGCGAGAGCAACACCGCAGTGGACATCATGGCAGCACAAAACGGGAACCTTCCGAAACAAGGCACTCTTGTAACCGTTGACGGGGAAACAGATTTGGAGCTTGAGACTCTGCTTAAGGCTTCAGCGTATGTTCTGGGAAACAGCCGCGTCAGCATTGTCTACAAGGCAGTGCTAGAGGATGGGAGAGCCTTTGCCGTTAGAAGGATCGGTGAGTGTGGGATTGAGAGAAGGAAGGACTTTGAGAACCAAGTGCGTGCCATTGCAAAGCTTCGCCATCCCAATTTGGTTAAGGTTCGCGGCTTCTGCTGGGGTCGAGATGATAAACTCCTAATATGTGACTACGTCCCCAATGGCAGCCTCGCCACCATTGATCACAGAATATCAGGTTCGTCCCCTCTGAACCTGTCCCTGGAGGCACGGTTGAAGATAGCAAAAGGGGTGGCACGAGGGTTGGTCTTCCTTCACGAGAAGAAGCATGTGCATGGCAATGTTAAACCTGGCAACATCCTGCTAAACTCGGAAATGGAAGCCATCATAAGCGATTTCGGGCTGGACCGGCTCCTCCTGAACGATGTGACCCACAGAGCAAACGGTTCGGCTAGACAACTAATGGCGAGCCAAAGAAGCCAGCAAGATCAGGCATTTGGTTCAAGTCCCTTCGCAGCAATGGGATCATCGTCGAGTGGTGCGGGCCACATGATGCCCTATCAAGCCCCAGAGTCACTTGAGAACATCAAACCCAGTCACAGATGGGATGTGTACTCTTTTGGAATGGTGTTGCTGGAGCTTCTAACCGGGAGGGTTTTCCTGGAGCGGGAGGTGGAGCAGTGGAACGAACCGGGTTTGGTGGAGGAGGAGCAGAACCGGGTTTTGAGAATGGCTGACGTAGCAATAAAATCTGAAATAGAAGGGAGGGAGAACGTGGTAGTGGCATGGTTCAAGTTGGGGCTTAGCTGTGTCTCTCATGCCCCACAAAAGAGACCCTCCATGAAAGAGACTCTTCAAATCTTAGACAAGATCCATGCTGCTGCTCCACTCAATTAA 2544 0.4741 MTETKRRWYRTQRRQARNKHNTKKKCTPVLKVPWPHLIVSLRFDKEFHKKLSQYVTSPKEIMNLNFQNLHLLWRLSSFLLLLLQSATSQSVTSLNSDGILLLKFKYSILSDPLSVLESWNYDDATPCSWYGVTCDQIGAPGTPDLFRVTSLTLPNSQLLGSISEDLGLIQYLRHIDLSNNFLNGSLPNTIFNSSQLQVLSLSNNVISGQLNQLVGKLTNLKVLNLSDNAFAGLIPENLTTLPNLTVVSLKSNYFSGSVPTGFKYVELLDLSSNLLNGSLPEDFGGESLRYMNLSYNKISGTIPPTFAKQIPGNSTVDLSFNNLTGPIPESLALLNEKTEFLSGNADLCGKPLKIMCTVPSTESTAPPNVTTSSPAIAAIPKIDSNPSTNTTGTPTSSQNISPSGLKPATIAAIVVGDLAGMALLALVILLVYQQRKKRYSDPNTNSTRDTNAASGNNSEKKYQTVSRQDADAKTVTPSLPCSCLTIKEEETSEATSSDSDRESNTAVDIMAAQNGNLPKQGTLVTVDGETDLELETLLKASAYVLGNSRVSIVYKAVLEDGRAFAVRRIGECGIERRKDFENQVRAIAKLRHPNLVKVRGFCWGRDDKLLICDYVPNGSLATIDHRISGSSPLNLSLEARLKIAKGVARGLVFLHEKKHVHGNVKPGNILLNSEMEAIISDFGLDRLLLNDVTHRANGSARQLMASQRSQQDQAFGSSPFAAMGSSSSGAGHMMPYQAPESLENIKPSHRWDVYSFGMVLLELLTGRVFLEREVEQWNEPGLVEEEQNRVLRMADVAIKSEIEGRENVVVAWFKLGLSCVSHAPQKRPSMKETLQILDKIHAAAPLN 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03402 847 Pfam Protein kinase domain 545 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03402 847 SUPERFAMILY Protein kinase-like (PK-like) 544 837 IPR011009 -
Vimu3g03402 847 MobiDBLite consensus disorder prediction 715 735 - -
Vimu3g03402 847 FunFam Leucine-rich repeat receptor-like protein kinase 264 358 - -
Vimu3g03402 847 MobiDBLite consensus disorder prediction 1 22 - -
Vimu3g03402 847 Gene3D Transferase(Phosphotransferase) domain 1 615 845 - -
Vimu3g03402 847 MobiDBLite consensus disorder prediction 361 403 - -
Vimu3g03402 847 FunFam Leucine-rich repeat receptor-like protein kinase 94 260 - -
Vimu3g03402 847 SUPERFAMILY L domain-like 99 353 - -
Vimu3g03402 847 MobiDBLite consensus disorder prediction 438 473 - -
Vimu3g03402 847 ProSiteProfiles Protein kinase domain profile. 539 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03402 847 Gene3D Ribonuclease Inhibitor 94 263 IPR032675 -
Vimu3g03402 847 Gene3D Ribonuclease Inhibitor 264 358 IPR032675 -
Vimu3g03402 847 Pfam Leucine Rich Repeat 172 190 IPR001611 GO:0005515
Vimu3g03402 847 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 147 839 - -
Vimu3g03402 847 Pfam Leucine rich repeat N-terminal domain 95 135 IPR013210 -
Vimu3g03402 847 CDD STKc_IRAK 545 840 - -
Vimu3g03402 847 Gene3D Phosphorylase Kinase; domain 1 517 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03402 Vimu-Chr3 47200028 47203831 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03402 75 841 Receptor kinase-like Gene Family AT4G37250 49.163 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu3g03402 Pkinase 1.9e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03402 - - gmx:100820334 1222.22