Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03397 ATGGGAATCAGAGTCTGCATAATTCTACTGTTGCTCAACACTGTTCAGAGCTTTCACCACCAAAAACAGCAACACAGTTTCTGTGACTTGCTCATTCTTCCACCCGGTTACGTTTGCTCCCAATATACTGTTGAAACGAAGCATGGCTTGTTGTTAGGTCTTGAACGCGTGTTTTCTTCATCTGTTTCCCTTCTGCTTCTGCATGGCTTATTCATGGATTTAGCCATGCATGATTTTGCAGAAATGACCAATTACATTAATTCAGTAACAAACACAAAGCTATTTGTACTCCAGCATTCACAGGGTAAAATGTCTTTTGCTGTTGCCTTCACTCAACTGGAGATAGCAGAAAACATTGAAGCTGCAGCTCTTGCAGCATCCAAGGACGTTCAAAAACTCAACCACAGAAGAACAAAATTAAGAGGTGCCAGAGTTTCCACAGTTTCTTCGTTTCATTCTCAACCAAGTTCATGGGAAGGGTTTCAGGATCTTGCTATGGCATTGGTATTTGTAATAGGCTATGTAGTCATCATATTTGAAGAATATTTAGCCTTCAATAAAAGTGGAGTGGGACTGTTGATGGCCGTAAGCTTATGGGTGATACGCATTATTGGGGCTCCATCAACTGATATAGAAGTTTCAGAGTTAACACATGCATCTGCACAAGTCAGTGAAATAGTAATTTTCTTGCTTGGTGCAATGACCATTGTTGAGATAATTGACGCTCATCGAGGATTTAAGCTTGTTACGGATAATATAACAACCCAAAATCCACGCCTTCTCCTATGGGTGATTGGATTTGTTACGTTCTTTCTAAGTTCAGTTCTGGACAGCTTGGCATCTACCGTAGTTATGATTTCTCTATTGCGAAAATTGTTACGTCTATCAGAGTTACGGAAGATATTGGGAGCTGTTGTTGTAATAGCAGCAAATGCTGGTGGTGCATGGAGTCCTATTGGTGCTGTTACCACTACTATGCTGTGGATACACGGTCAAATATCTGTAATACAAACAATGAAGGATTTGTTTATACCTTCAATCATTTCTCTAGCTGTTCCTCTAGTTCTGATGTCCCTGACTAGTATAGTTAATGATGGAAAAGGACAAAACTCTCTCGGTATCTTTGCCTCTGAGGAGAGTGCTCCACAAGGACTGCTTGTTTTCTCATTGAGTTTTGGAGCTTTGCTTTTTGTCCCAGTGTTCAGGGCCCTCACAGGTTTACCTCCCTACATGGGAATGCTTCTCGGACTTGGCATGCTTTGGATCGTCACCGATGTTATCCATTATGGTGATTCAGAGAGGCAAAAGCTAAAAGTGCCACATGCTCTGTCAAGAATAAACACTCAGGGAGCACTGTTTTTCCTGGGAATTCTATTATCCGTTAGCAGCCTGGAGGCAGCAGGGATTCTGCAGGAAATAGCAAATTACTTTGATGCACATGTGCCGAGTAGTGAACTGATTGCAAGTGCTATTGGACTCATATCTGCTGTAATAGACAATGTTCCATTGGTTGCTGCAACAATGGGAATGTATGATGTCTCTTCTTTCCCTCGAGATTCTGAATTCTGGCAATTGATTGCATTATGTGCTAGTACTGGTGGATCCATATTAATTGCTGGTTCAGCTGCTGGAGTTGCGTTCATGGGGATGGAAAAGGTGAACTTCTGTTGGTACTTGCGGAAGGTTAGTGGCTTTGCCTTAGCAGGTTATGCTGCTGGTATTGCTACCTATTTAGTGCTTCATAAATCAAGAATTTGA 1758 0.417 MGIRVCIILLLLNTVQSFHHQKQQHSFCDLLILPPGYVCSQYTVETKHGLLLGLERVFSSSVSLLLLHGLFMDLAMHDFAEMTNYINSVTNTKLFVLQHSQGKMSFAVAFTQLEIAENIEAAALAASKDVQKLNHRRTKLRGARVSTVSSFHSQPSSWEGFQDLAMALVFVIGYVVIIFEEYLAFNKSGVGLLMAVSLWVIRIIGAPSTDIEVSELTHASAQVSEIVIFLLGAMTIVEIIDAHRGFKLVTDNITTQNPRLLLWVIGFVTFFLSSVLDSLASTVVMISLLRKLLRLSELRKILGAVVVIAANAGGAWSPIGAVTTTMLWIHGQISVIQTMKDLFIPSIISLAVPLVLMSLTSIVNDGKGQNSLGIFASEESAPQGLLVFSLSFGALLFVPVFRALTGLPPYMGMLLGLGMLWIVTDVIHYGDSERQKLKVPHALSRINTQGALFFLGILLSVSSLEAAGILQEIANYFDAHVPSSELIASAIGLISAVIDNVPLVAATMGMYDVSSFPRDSEFWQLIALCASTGGSILIAGSAAGVAFMGMEKVNFCWYLRKVSGFALAGYAAGIATYLVLHKSRI 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03397 585 Pfam Citrate transporter 174 530 IPR004680 GO:0016020|GO:0055085
Vimu3g03397 585 Coils Coil 116 136 - -
Vimu3g03397 585 PANTHER SODIUM/PROTON ANTIPORTER 1-RELATED 121 583 IPR045016 GO:0006814|GO:0015297
Vimu3g03397 585 NCBIfam sodium:proton antiporter NhaD 191 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03397 Vimu-Chr3 47174692 47181774 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03397 162 582 Antiporters AT3G19490 77.197 0.0 644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03397 - - vra:106771718 904.049