Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu3g03393 | ATGGACCCCAAGGACGAATTTGAACTCACAGGGACCACTTTCTCTCAGTTACTATTCGGAGATGACCTTGATGCAACAACACCTGCATTGCCTCTCCCTCACCACCACTCCCTCTCCGCTTCCCCTATTTTCTCTTTTCACAAGCCACCCAAAATGCTATGCTTTGGAAACCATGAAACCATACCCCACATTCCTCCCACCATCGTCACCCCTCAGAAATCTGTCATCACTTCCAGTGACTCCTCTTCTGCTTCCTCCTCCAACCACACCAACACCGCCTTCACTTCCCTGCCCAAGTCCACTAAAAAACGGAATGGGTTGGGACAAGAACCACTCACCAAGGTGGGTGTCGGAGGCCAGAGACAAACTAAAAAGACCAAGGCAGAGAACCCCACTTCAACCGGACATGCAAAGAGGAAGGAGAGGCTTGGGGAAAGAATTGCAGCGTTACAACAGCTTGTTTCTCCCTTCGGCAAGACAGATACAGCATCGGTGCTTCACGAGGCCATGGGATATATAAGGTTTCTTCACGACCAAGTTCAGGTCCTGTGCTCTCCTTACTTGCAAAGCTTGTCATCGTCACACCAGCAACACCAGCACGTGAGTCCCATCCCGTCTTTCATCATTCTCGCATTCTTCTTTATGGTGCAAGACAAACGTAGTACGAAGCAGTCACAAGTGTGGTTGCAAAACACCGATATTGTGGATGCAATTGCGTGTTTGGAAAACCTTGATGATGAGTATGATTTATTAGAAGGTGAAGGAGAAAAGAAGGAGGAGGAAGTGAAGAAGGACTTGAGGAGTAGGGGTCTGTGCTTGATCCCAGTGGGATGCACCGTACACGTGGCGAGTAGCAACGGTGCTGATTATTGGTCACCTGGTGCAATAGGGAACAAAGTTTCACCATCGGGGAAGAAGTAG | 921 | 0.4908 | MDPKDEFELTGTTFSQLLFGDDLDATTPALPLPHHHSLSASPIFSFHKPPKMLCFGNHETIPHIPPTIVTPQKSVITSSDSSSASSSNHTNTAFTSLPKSTKKRNGLGQEPLTKVGVGGQRQTKKTKAENPTSTGHAKRKERLGERIAALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYLQSLSSSHQQHQHVSPIPSFIILAFFFMVQDKRSTKQSQVWLQNTDIVDAIACLENLDDEYDLLEGEGEKKEEEVKKDLRSRGLCLIPVGCTVHVASSNGADYWSPGAIGNKVSPSGKK | 306 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu3g03393 | 306 | Gene3D | - | 120 | 202 | IPR036638 | GO:0046983 | |
Vimu3g03393 | 306 | MobiDBLite | consensus disorder prediction | 73 | 142 | - | - | |
Vimu3g03393 | 306 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 138 | 188 | IPR036638 | GO:0046983 | |
Vimu3g03393 | 306 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 127 | 176 | IPR011598 | GO:0046983 | |
Vimu3g03393 | 306 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 46 | 281 | - | - | |
Vimu3g03393 | 306 | MobiDBLite | consensus disorder prediction | 73 | 107 | - | - | |
Vimu3g03393 | 306 | Coils | Coil | 241 | 261 | - | - | |
Vimu3g03393 | 306 | CDD | bHLH_AtbHLH_like | 138 | 183 | IPR045239 | - | |
Vimu3g03393 | 306 | FunFam | Transcription factor bHLH113 | 120 | 190 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu3g03393 | Vimu-Chr3 | 47144816 | 47146459 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu3g03393 | 119 | 293 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT1G05710 | 38.857 | 2.05e-25 | 97.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu3g03393 | - | - | gmx:100809317 | 223.016 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu3g03393 | 3 | 47144816 | 47146459 | Vimu3g03393 | 3 | 47144816 | 47146459 | ECH |