Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03393 ATGGACCCCAAGGACGAATTTGAACTCACAGGGACCACTTTCTCTCAGTTACTATTCGGAGATGACCTTGATGCAACAACACCTGCATTGCCTCTCCCTCACCACCACTCCCTCTCCGCTTCCCCTATTTTCTCTTTTCACAAGCCACCCAAAATGCTATGCTTTGGAAACCATGAAACCATACCCCACATTCCTCCCACCATCGTCACCCCTCAGAAATCTGTCATCACTTCCAGTGACTCCTCTTCTGCTTCCTCCTCCAACCACACCAACACCGCCTTCACTTCCCTGCCCAAGTCCACTAAAAAACGGAATGGGTTGGGACAAGAACCACTCACCAAGGTGGGTGTCGGAGGCCAGAGACAAACTAAAAAGACCAAGGCAGAGAACCCCACTTCAACCGGACATGCAAAGAGGAAGGAGAGGCTTGGGGAAAGAATTGCAGCGTTACAACAGCTTGTTTCTCCCTTCGGCAAGACAGATACAGCATCGGTGCTTCACGAGGCCATGGGATATATAAGGTTTCTTCACGACCAAGTTCAGGTCCTGTGCTCTCCTTACTTGCAAAGCTTGTCATCGTCACACCAGCAACACCAGCACGTGAGTCCCATCCCGTCTTTCATCATTCTCGCATTCTTCTTTATGGTGCAAGACAAACGTAGTACGAAGCAGTCACAAGTGTGGTTGCAAAACACCGATATTGTGGATGCAATTGCGTGTTTGGAAAACCTTGATGATGAGTATGATTTATTAGAAGGTGAAGGAGAAAAGAAGGAGGAGGAAGTGAAGAAGGACTTGAGGAGTAGGGGTCTGTGCTTGATCCCAGTGGGATGCACCGTACACGTGGCGAGTAGCAACGGTGCTGATTATTGGTCACCTGGTGCAATAGGGAACAAAGTTTCACCATCGGGGAAGAAGTAG 921 0.4908 MDPKDEFELTGTTFSQLLFGDDLDATTPALPLPHHHSLSASPIFSFHKPPKMLCFGNHETIPHIPPTIVTPQKSVITSSDSSSASSSNHTNTAFTSLPKSTKKRNGLGQEPLTKVGVGGQRQTKKTKAENPTSTGHAKRKERLGERIAALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYLQSLSSSHQQHQHVSPIPSFIILAFFFMVQDKRSTKQSQVWLQNTDIVDAIACLENLDDEYDLLEGEGEKKEEEVKKDLRSRGLCLIPVGCTVHVASSNGADYWSPGAIGNKVSPSGKK 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03393 306 Gene3D - 120 202 IPR036638 GO:0046983
Vimu3g03393 306 MobiDBLite consensus disorder prediction 73 142 - -
Vimu3g03393 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 188 IPR036638 GO:0046983
Vimu3g03393 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 176 IPR011598 GO:0046983
Vimu3g03393 306 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 46 281 - -
Vimu3g03393 306 MobiDBLite consensus disorder prediction 73 107 - -
Vimu3g03393 306 Coils Coil 241 261 - -
Vimu3g03393 306 CDD bHLH_AtbHLH_like 138 183 IPR045239 -
Vimu3g03393 306 FunFam Transcription factor bHLH113 120 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03393 Vimu-Chr3 47144816 47146459 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03393 119 293 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 38.857 2.05e-25 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03393 - - gmx:100809317 223.016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03393 3 47144816 47146459 Vimu3g03393 3 47144816 47146459 ECH