Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03387 ATGAACAGAGAAAAGGACAACTGTGGAAGTGAGGATGACAACCCCAAAGGGTGGTTGAACCTGAACATAGGAGGCACTTCACTCTCAACAGTTGGAGACCCTGATGTACAATCAAGACCAACCACTGCAAAAGTTTTTTCATGCAACTTCTGCATGAGGAAGTTCTTCAGTTCACAGGCATTAGGAGGTCATCAAAACGCCCACAAGAGGGAAAGGGGAGCTGCCAGAAGGTACCAATCTCAGAGATCGATGACAGTAATGGGCTTCTCCATGAACACACCAATTATGCTTCGATCACTCGGTGTCCAGCCCCATTCACTCGTGCACAAGCCATGCAGAGGTGGTACTGTGGTGGCACCAAGCTTTCATGATGCACATGCAAGGCTTGCGATGGCTTGGACGCCTTTCTCGTCAGAGGATCAAACAGATCTGGTGTGGCCAGGTAGCTTTCGCTCGGTTCCGCAACAGCCCCAGCCACCGCAGGAGCCACTTAAGCTTGATTTAGACCTCAGACTCTGA 519 0.5029 MNREKDNCGSEDDNPKGWLNLNIGGTSLSTVGDPDVQSRPTTAKVFSCNFCMRKFFSSQALGGHQNAHKRERGAARRYQSQRSMTVMGFSMNTPIMLRSLGVQPHSLVHKPCRGGTVVAPSFHDAHARLAMAWTPFSSEDQTDLVWPGSFRSVPQQPQPPQEPLKLDLDLRL 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03387 172 Gene3D Classic Zinc Finger 31 92 - -
Vimu3g03387 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 73 IPR013087 -
Vimu3g03387 172 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Vimu3g03387 172 PANTHER ZINC FINGER PROTEIN 4-LIKE 3 172 - -
Vimu3g03387 172 MobiDBLite consensus disorder prediction 149 172 - -
Vimu3g03387 172 SUPERFAMILY beta-beta-alpha zinc fingers 42 72 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03387 Vimu-Chr3 47117272 47117790 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03387 44 160 C2H2 Transcription Factor Family AT1G24625 43.089 1.36e-19 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03387 - - gmx:100811125 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03387 3 47117272 47117790 Vimu3g03387 3 47117272 47117790 ECH