Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03385 GAGATTGAGAAAAGGGAACTCTCACGAAACTCAACTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTCACCCTCTTCTCTCTGCAGCCAATCCCCATTTCAGATCGAGCCCTTCTTCTTCCTCCACCCTTTCCCATTCGCTGTGGTGACTGCTCTCTCTTCTTCACCACCAAGATTACTTGACTCACATCTAGACTATAGTGGTGGATGCTGTGGTGTGCGGTTTTTCCTCAGACCTATGACTAGTCCATTTGGAGAATTGACAAGCAATAACAGTGCCGCTGGAAGGATGAGTACTGAACAATCTGAATTATCTGAAAAAACACAGTTAGGGACTGAGCAGTTACTAAAGGAACAACGGGAGTCTGGTACTGTTTTAACCAGTTCAGTTATCGATGAAATATCAAATCAAGTTTCTGCTAATGCGACAGAGAATTCTGTTATTTTACTGCCTGCACCACCTCAACATGACTCAGAAAAGAATTGTCAGAATGTAGAAGGTTCACACCTGCAACAAAGTACCGATAAAGAAGTCTCTTTACAGTTATCTAACAACAAGCCAGAAAACCCATCCCAACCATTGTCTGAAAATGAACCTGTGGAATCCGTTTCTGCCTCTGCTGGGGATGGCCAAAAGCAATCTAGTCCAGCTCAAGCGAATACAAGTCATGTGAATAAATTGTTGGATCCACCTTCTGAAGATGTTGTGACCAATTTTTCAGAAAAAGTGTCTAATAGCCCCGCCAATTCGAAATTTAGGCGCAAGGGTAAAAAAAACTCAAAATTGTTGAAGAAGACATATATGCTACGATCAATAGGAAGCAGTGACAGAGCTTTGCGGTCAAAAACAAAAGAAAATCCCAAGACACCTGAACCAAGTAGTAATTTGGTTGATTTTAATAATAGTAATAATAATAATAATAATAATAGCAATGCTGGAGGGAAGAGGAAAACTAGTAGGAAGAAGAGAAAGAGTGGAGAGGTTGGAATCACTGATCAATTCTCCAGAATCAAATCTCACTTAAGATATTTATTAAACAGAATAAGCTACGAGAAAAGCTTGATTGATGCTTATTCTGGCGAAGGCTGGAAAGGATACAGTATGGAAAAATTGAAGCCTGAGAAAGAACTTCAACGGGCCAAGTCTGAAATTCTTCGACGCAAATTGAACATTAGGAATCTATTTCGAGATTTGGATTCATTGTGTGCTGAAGGAAAGCTACCAGAATCTTTATTTGATTCTGAGGGAGAGATTGACAGTGAGGATATATTCTGTGCAAAATGCCATTCCAAAGAGTTGAGTTCTAATAATGATATAATTCTCTGTGATGGTGTCTGCGACCGTGGCTTTCACCAGCTCTGTTTGTTTCCTCCGTTGTTAACTGAAGACATTCCACCTGATGATGAGGGTTGGTTATGCCCTGGATGTGATTGCAAAGATGACTGCATGGACCTTATTAATGACTCCTTTGGAACTAGTCTCTCTATTAGTGACACCTGGGAGAGCGTTTTTCCTGAAGCAGCAGCAGCTGCTGGGAATAATATGGATAACAACTTGGGACTCCCTTCTGATGATTCTGATGATGATGATTATAATCCTAATGGTCCAGAGGATTTGAAAATTGAAGGAGATGAATCAAGTTCTGAGGAATCTGACTATGCTTCTGCTTCTGAGAATTTGGAGGGTTCACATGGGGATCAATACTTGGGCCTTCCATCTGAAGATTCTGATGATGGTGATTATGACCCTGATGCTCCAGATGTTGACAATAAGGTCAATGAAGAAAGTTCAAGCTCTGATTTCACATCTGACTCTGAGGATCTTGCTGCTGCAATTGTGGATAACGCATCCCCTGGACAGGATGAGGAAATCAGATCTGCATCATTGAATGATGTTAAGCACTTGAGAAGTTATGGCAAAAAAAAGGGTAAAGCTGGTAAGAAGCTATCTATGGCTGATGAACTGTCGTCTTTACTAGAGCCAGATTCTGGTCGAGAAGGTTCTATACTTGTTTCTGGGAAAAGGAATTTGGAAAGGTTGGACTACAAAAAGTTGTATGATGAGACATACCATAGCGATACTAGTGAAGATGAAGATTGGACAACCACTGTTACTCCTAGCAGAAAGAAGAAAGGCAATGCGACTCCTGTGTCTCCAAATGGAAATGCTTCAAATAATTCCATGCACACTCCTAAGAGGAATGGGCATCAGAATAAATTTGAAAATACAAAAAATTCACCTGCCAGGGAACAAACGTCTAGATCTCCAGGAGGCAATAGACTAGGAGAAGCAGTAGTTCAGGATTGCCTATTGTTGTATTTTCAGAGACTTCACATATCTTTTAAAGAAAATCAGTATCCAGATAGAGCTACTAAAGAAAGCTTGGCACAGGAACTTGGACTTACTTATCAGCAGGTCATATCTTTTAGCTTTACACTTTACAGTGAACACAATTTATCTTTCGCTTGTGACTTTCTAAATTTCCCATTCTTATTTCACTTTCAGGTTGGCAAATGGTTTGACAATACACGATGGAGCTTCCGGCACTCATCACAAACCAATTCAGGTAGAAATACATTTCGGAAAGCTGCTGATAGCAGAGCTGAAAATAAAGGGGGTGAATGTGAGTTAGTGTCCCCGGAGGTCAGTGGAGAAAAAGCAAAAGCCCCAAGCTCTGGAAAAAGAAAGCATTTGTCAGAACACCAACTATCTGAAGACAACGCTCATCAAACCCAAAGGGGGAAGAAAATGAAGACAAGGAGAAGGAAATGA 2781 0.407 EIEKRELSRNSTLSFSLSLSLSLSPSPSSLCSQSPFQIEPFFFLHPFPFAVVTALSSSPPRLLDSHLDYSGGCCGVRFFLRPMTSPFGELTSNNSAAGRMSTEQSELSEKTQLGTEQLLKEQRESGTVLTSSVIDEISNQVSANATENSVILLPAPPQHDSEKNCQNVEGSHLQQSTDKEVSLQLSNNKPENPSQPLSENEPVESVSASAGDGQKQSSPAQANTSHVNKLLDPPSEDVVTNFSEKVSNSPANSKFRRKGKKNSKLLKKTYMLRSIGSSDRALRSKTKENPKTPEPSSNLVDFNNSNNNNNNNSNAGGKRKTSRKKRKSGEVGITDQFSRIKSHLRYLLNRISYEKSLIDAYSGEGWKGYSMEKLKPEKELQRAKSEILRRKLNIRNLFRDLDSLCAEGKLPESLFDSEGEIDSEDIFCAKCHSKELSSNNDIILCDGVCDRGFHQLCLFPPLLTEDIPPDDEGWLCPGCDCKDDCMDLINDSFGTSLSISDTWESVFPEAAAAAGNNMDNNLGLPSDDSDDDDYNPNGPEDLKIEGDESSSEESDYASASENLEGSHGDQYLGLPSEDSDDGDYDPDAPDVDNKVNEESSSSDFTSDSEDLAAAIVDNASPGQDEEIRSASLNDVKHLRSYGKKKGKAGKKLSMADELSSLLEPDSGREGSILVSGKRNLERLDYKKLYDETYHSDTSEDEDWTTTVTPSRKKKGNATPVSPNGNASNNSMHTPKRNGHQNKFENTKNSPAREQTSRSPGGNRLGEAVVQDCLLLYFQRLHISFKENQYPDRATKESLAQELGLTYQQVISFSFTLYSEHNLSFACDFLNFPFLFHFQVGKWFDNTRWSFRHSSQTNSGRNTFRKAADSRAENKGGECELVSPEVSGEKAKAPSSGKRKHLSEHQLSEDNAHQTQRGKKMKTRRRK 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03385 926 MobiDBLite consensus disorder prediction 852 926 - -
Vimu3g03385 926 MobiDBLite consensus disorder prediction 694 708 - -
Vimu3g03385 926 ProSiteProfiles 'Homeobox' domain profile. 780 853 IPR001356 GO:0003677
Vimu3g03385 926 MobiDBLite consensus disorder prediction 891 916 - -
Vimu3g03385 926 MobiDBLite consensus disorder prediction 154 331 - -
Vimu3g03385 926 MobiDBLite consensus disorder prediction 160 230 - -
Vimu3g03385 926 Gene3D - 775 872 - -
Vimu3g03385 926 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 421 484 IPR013083 -
Vimu3g03385 926 Pfam PHD-finger 427 482 IPR019787 -
Vimu3g03385 926 ProSitePatterns Zinc finger PHD-type signature. 428 479 IPR019786 -
Vimu3g03385 926 SMART HOX_1 771 857 IPR001356 GO:0003677
Vimu3g03385 926 MobiDBLite consensus disorder prediction 517 609 - -
Vimu3g03385 926 FunFam pathogenesis-related homeodomain protein-like 419 479 - -
Vimu3g03385 926 SUPERFAMILY Homeodomain-like 778 855 IPR009057 -
Vimu3g03385 926 CDD homeodomain 778 809 IPR001356 GO:0003677
Vimu3g03385 926 ProSiteProfiles Zinc finger PHD-type profile. 425 482 IPR019787 -
Vimu3g03385 926 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 209 913 - -
Vimu3g03385 926 MobiDBLite consensus disorder prediction 709 736 - -
Vimu3g03385 926 SMART PHD_3 427 480 IPR001965 -
Vimu3g03385 926 MobiDBLite consensus disorder prediction 291 317 - -
Vimu3g03385 926 SUPERFAMILY FYVE/PHD zinc finger 417 485 IPR011011 -
Vimu3g03385 926 CDD PHD_PRHA_like 427 479 IPR045876 -
Vimu3g03385 926 MobiDBLite consensus disorder prediction 743 761 - -
Vimu3g03385 926 MobiDBLite consensus disorder prediction 694 763 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03385 Vimu-Chr3 47102615 47109719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03385 312 809 Homeobox Transcription Factor Family AT3G19510 47.004 9.42e-125 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Vimu3g03385 PHD 4e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03385 - - gmx:100811458 1052.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03385 3 47102615 47109719 Vimu3g03385 3 47102615 47109719 ECH