Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03384 ATGACTTCTTCTTGCCCAGGAATTGATCCTCTTCCCCATGAGTTCCGCTTCTTCAAGATTATTGTGGATACTACTCTCCGAGAGGGAAAGATTATGATTCCAAAGGAGTTCACTCGAAAATATGGTGGTAGATTGTTAAACCCTCTGTTTCTCAAGGTTCCCGATGGCATTGAATGGGAACTATGTTGGACTAAAGACAGTGCTGGTAATGTTTGGTTGGAAAAGGGATGGATGGAATTCGCCACTTATTACTCCCTTGGCTACGGCCATCTTGTGACGTTCAAATGCCAACAAACATGTACATTGGAGCTCCAACATCACCATCTCTTCCTAGGCCTTCTAAGAAACCAAGGACACACCCAAGTAGAGTTGTTGGGCAAAGCTCCAGTTTACCTCAGCATGTCCAGGTTAAAGTTGATCTGCTTCAAGAATAGTGGTGCAACCAGATCTGAAACTCCTTCTTTTATGGTTACCCTGAAGGAAACAAACGTGTATGGATATATTCTGGTCATTCCGTCCATCTTTACTAAAAAGTATTTGAAGGAAACCGGCAAACAAGATATTCTCCTCCAAGTCTTGGATGGGAGAACTTGGCACGTTACATTGAAGAATGGCAAATTTTTCAAGGGATGGAGGACTTTTGTATCACATAACTATTTGAATGTTGGAGATGTTTGCATTTTTGAGCTAACAGAGAGCCAAGCTCCATGTTTTAAAGTGTCAATAATTCCAATTTCACAAGATAAATGTTCGAGTTCACAGGCTATGCAAGAAGCAGCAAAATTCACGTCCGTAAATCCTTTTTTCACGCTCAATATAAGGGCAAATCATAGGGGAGATTTCAGACCGCGTGTACCACTTGATTTTGTGATAAAGTACTTCCACAAGAAACAGGTTGTGACGTTACAGTTTGGGAATAAATCATGGCGGGTAAACCGGGTTGGTGCTGTTCCAACAAAGCTGTCTCAAGGTTGGAGCTCATTTGCAAAAGAATGTAAGTTGCAACCTGGAAATGTGGCTGAAGCTTTTTTCTTCTGCGAAGTGTTACTAACAGACAAAGGTGCAGTAGCACAGAGCACCTGCAACCTAGCTCCTTTGGAGTCTAAGGCAGTAAGAGAACTTCAGATGAACGGACAGAACTCCAATTACAGGACCTACTCTAGAGCTTTTACTACTATTGAAAACTATGCTAAGGAAGCTGTATTGAGCAGGTTACTTCCCTTGGTCCAACCAGCTTCAGGTCACATCTCCAGCTTATTCAAGCTTCCCATGCAAGCTTCTTCCAGCAAGTCATGTTCAGGTCAGGGTTTATCACAGCACCGAATTACACAAGCTTCTCCTCTCAAGTTTACTGCACCAGCAAGCTAA 1368 0.4254 MTSSCPGIDPLPHEFRFFKIIVDTTLREGKIMIPKEFTRKYGGRLLNPLFLKVPDGIEWELCWTKDSAGNVWLEKGWMEFATYYSLGYGHLVTFKCQQTCTLELQHHHLFLGLLRNQGHTQVELLGKAPVYLSMSRLKLICFKNSGATRSETPSFMVTLKETNVYGYILVIPSIFTKKYLKETGKQDILLQVLDGRTWHVTLKNGKFFKGWRTFVSHNYLNVGDVCIFELTESQAPCFKVSIIPISQDKCSSSQAMQEAAKFTSVNPFFTLNIRANHRGDFRPRVPLDFVIKYFHKKQVVTLQFGNKSWRVNRVGAVPTKLSQGWSSFAKECKLQPGNVAEAFFFCEVLLTDKGAVAQSTCNLAPLESKAVRELQMNGQNSNYRTYSRAFTTIENYAKEAVLSRLLPLVQPASGHISSLFKLPMQASSSKSCSGQGLSQHRITQASPLKFTAPAS 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03384 455 PANTHER B3 DOMAIN-CONTAINING 14 101 - -
Vimu3g03384 455 SUPERFAMILY DNA-binding pseudobarrel domain 149 244 IPR015300 -
Vimu3g03384 455 CDD B3_DNA 153 244 IPR003340 GO:0003677
Vimu3g03384 455 SMART B3_2 155 246 IPR003340 GO:0003677
Vimu3g03384 455 SMART B3_2 268 354 IPR003340 GO:0003677
Vimu3g03384 455 SMART B3_2 17 117 IPR003340 GO:0003677
Vimu3g03384 455 Gene3D - 140 247 IPR015300 -
Vimu3g03384 455 Gene3D - 249 344 IPR015300 -
Vimu3g03384 455 Pfam B3 DNA binding domain 24 106 IPR003340 GO:0003677
Vimu3g03384 455 Pfam B3 DNA binding domain 158 239 IPR003340 GO:0003677
Vimu3g03384 455 ProSiteProfiles B3 DNA-binding domain profile. 16 117 IPR003340 GO:0003677
Vimu3g03384 455 SUPERFAMILY DNA-binding pseudobarrel domain 266 339 IPR015300 -
Vimu3g03384 455 CDD B3_DNA 15 95 IPR003340 GO:0003677
Vimu3g03384 455 SUPERFAMILY DNA-binding pseudobarrel domain 15 103 IPR015300 -
Vimu3g03384 455 ProSiteProfiles B3 DNA-binding domain profile. 154 246 IPR003340 GO:0003677
Vimu3g03384 455 Gene3D - 12 108 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03384 11 97 B3 DNA Binding Superfamily AT3G18990 32.184 5.84e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu3g03384 B3 9.4e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03384 - - var:108325311 548.895