Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03373 ATGCTGCGTCTGTGCTACGGTCCTCTCGATTGCTGCTTCCGACGCCGTGGTGGCCGCGCCGTCGACGGACTACTCTGGCACACAGACTTGAAGCCCCACGCCTCCGGCGACTTCTCCATCGCCGTCGCACAGGCCAATTACAGTCTCGAGGATCAGAGCCAAGTCTTCACCTCCCCCTCCGCTACCTACGTCGGCGTCTACGACGGCCACGGCGGCCCCGAAGCTTCTAGATTCGTCAACAAACGACTCTTCCCCTATTTACACAAATTTGCCACTGAGCAAGGGGGTTTGTCTGTGGATGTGATAAAAAAGGCATTTAGTGCCACAGAGGAGGAATTCCTGCACTTGGTGAAGCTTTCCTTGCCCATTAGTCCTCAGATTGCTTCTGTGGGATCCTGTTGCCTTTTTGGTGCAATTTCTAATAATGTGTTGTACGTTGCCAACCTGGGAGACTCTAGAGCTGTTCTTGGAAGGAGGGATGTCCAGAGAAAGAACAGTCCAGTGGTGGCACAGCGCTTGTCAACTGATCATAATGTAGCTGATGCGGAGGTGAGAAGAGAAGTTGAAGCTCTCCATCCTGATGACTCACACATAGTGGTTTATAGCCGAGGAGTTTGGAGGATAAAGGGCATTATTCAGGTTTCAAGATCTATTGGCGATGTGTATTTAAAGAAACCTGATTTCTATCGAGACCCTGCTTTTCAGCAATTTGGAAATCCTATTCCTTTGAAGCGTCCCGTGATGACAGCTGAACCTTCAATCATTATCAGGGAGCTTGAGTCGGAGGATTTATTCTTGATATTTGCTTCCGATGGACTGTGGGAACAATTAAGTGATGAAGCAGCAGTTCAGATTGTTTTCAAGTATCCAAGAGCTGGAATTGCCAAGAGACTGGTGAGAGCCGCTCTTCAAGAAGCTGCAAAGAAGAGAGAGATGAGATATGATGACATAAAAAAAATCGACAAAGGAATAAGACGACACTTCCATGATGATATCACTGTGATTGTAATCTATCTTGATCACCATGCGGGATCCTCTAATGGTAGATTCAAGCAAACTGCTGTTGGCTATACAACTGCTCCTGTTGATATTTTTTCCCAAAATGCGGACGAAGCAGAAAAGAGAATGCTTGGTACAATTGCCTGA 1146 0.4729 MLRLCYGPLDCCFRRRGGRAVDGLLWHTDLKPHASGDFSIAVAQANYSLEDQSQVFTSPSATYVGVYDGHGGPEASRFVNKRLFPYLHKFATEQGGLSVDVIKKAFSATEEEFLHLVKLSLPISPQIASVGSCCLFGAISNNVLYVANLGDSRAVLGRRDVQRKNSPVVAQRLSTDHNVADAEVRREVEALHPDDSHIVVYSRGVWRIKGIIQVSRSIGDVYLKKPDFYRDPAFQQFGNPIPLKRPVMTAEPSIIIRELESEDLFLIFASDGLWEQLSDEAAVQIVFKYPRAGIAKRLVRAALQEAAKKREMRYDDIKKIDKGIRRHFHDDITVIVIYLDHHAGSSNGRFKQTAVGYTTAPVDIFSQNADEAEKRMLGTIA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03373 381 SMART PP2C_4 31 337 IPR001932 -
Vimu3g03373 381 PANTHER PROTEIN PHOSPHATASE 36 338 IPR015655 GO:0004722|GO:0006470
Vimu3g03373 381 SUPERFAMILY PP2C-like 46 341 IPR036457 -
Vimu3g03373 381 ProSitePatterns PPM-type phosphatase domain signature. 63 71 IPR000222 GO:0043169
Vimu3g03373 381 CDD PP2Cc 50 339 IPR001932 -
Vimu3g03373 381 Gene3D - 28 348 IPR036457 -
Vimu3g03373 381 ProSiteProfiles PPM-type phosphatase domain profile. 37 339 IPR001932 -
Vimu3g03373 381 FunFam Probable protein phosphatase 2C 42 28 347 - -
Vimu3g03373 381 Pfam Protein phosphatase 2C 58 308 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03373 Vimu-Chr3 47032936 47035382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03373 22 346 PP2C-type Phosphatase Gene Family AT3G51370 57.658 1.93e-140 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03373 K01102 - gmx:100812137 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03373 3 47032936 47035382 Vimu3g03373 3 47032936 47035382 ECH
Vimu7g02765 7 23248219 23250691 Vimu3g03373 3 47032936 47035382 PCT