Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03372 ATGGTGCAGCTTGGGCTTTGTGTTGCTCCATTACCTGAGGCCATTGTTTCTGAACCGGAACTGTGCCGCTTCTTCATCGAACTTGCCATTGCCTTTGACCCTTCTATCTCTCCGTTTCCTTTTTCTCCATCTCTTTTCACTCTCCATTCGCTCGTCGAAACAGGAACATTGAATCGTGATTCGCTGTGTATGACGAGCGCTTCGGAGCTATTCCACACCAGAAGGCATCGATTGGGACGAAATTCTATCGATCTAGGGTTCGACACAGAACTCCAAGCCGCCGATTCTTTCCGCCGTCGCCACCACGTCCGCCGCCTCCGTCACCACCCGGAGCGTGCATCTGATAGAGTCGGTGGGAGGTATCGACGGTCTTTTGTAAATGATAGCGTTGATTCCGAAGAAAACGTAAGAGGCATTCTTGGAGGGAGTAACAGTGAGAGGCTACCCGTGGGTGTGGTTCTTGCACGGGCCAGACTCCTTCAGAGGTTGAGAGGGGAACCTTTGTCTAGAAACAGGCAATATGGTATAGATTCATTGGGTGAGGATCGGGAAAGGGAATCATCAAATGAAGTTGCAACTCAGGCCACTCTAGTTACTGACTTGACTTCTCAGATGGGAAGGTCCCGGTTCTTGCAGGAGCTACACAAAAAGCCACCAGGGCTTACTCAGGAGGCCTTGGACTGTTTGGATCAGGAAGTTTTTAGCAGCAGCGAGACAGGATTGGATTCCAGGGTAATGCAGGACTGTAGTATATGCTTGGAAACTTTCACGGATGGAGATGATCTGATACGTCTGCCATGTGGACATAAATTCCATTCTGTTTGCTTGGATCCATGGATTCGCTGCTGTGGAGACTGCCCATATTGTCGAAGACGTGTAGTTCTAAATACTCACTTACCACAATACGACCACGAGTAA 918 0.4935 MVQLGLCVAPLPEAIVSEPELCRFFIELAIAFDPSISPFPFSPSLFTLHSLVETGTLNRDSLCMTSASELFHTRRHRLGRNSIDLGFDTELQAADSFRRRHHVRRLRHHPERASDRVGGRYRRSFVNDSVDSEENVRGILGGSNSERLPVGVVLARARLLQRLRGEPLSRNRQYGIDSLGEDRERESSNEVATQATLVTDLTSQMGRSRFLQELHKKPPGLTQEALDCLDQEVFSSSETGLDSRVMQDCSICLETFTDGDDLIRLPCGHKFHSVCLDPWIRCCGDCPYCRRRVVLNTHLPQYDHE 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03372 305 SMART ring_2 249 289 IPR001841 -
Vimu3g03372 305 ProSiteProfiles Zinc finger RING-type profile. 249 290 IPR001841 -
Vimu3g03372 305 SUPERFAMILY RING/U-box 248 299 - -
Vimu3g03372 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 294 IPR013083 -
Vimu3g03372 305 Pfam Ring finger domain 248 290 IPR001841 -
Vimu3g03372 305 CDD RING-H2_PA-TM-RING 248 290 - -
Vimu3g03372 305 PANTHER SI:CH211-59O9.10 92 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03372 Vimu-Chr3 47017677 47024859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03372 64 294 C3H Transcription Factor Family AT1G49850 41.860 3.05e-42 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03372 - - gmx:100814695 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03372 3 47017677 47024859 Vimu3g03372 3 47017677 47024859 ECH