Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03369 ATGGGTGATGCACTAAATGAAGTGCAGCACAGGGGTGGTGTACCGGCTTCTTCTCCCAAGAGGGACATTGCATTGTTTGAAGGAGACAAGGATTTTGAGCCGCACAATGGCATTGAATTTGAATCCCATGAAGCAGCATATTTATTTTATCAGGAATATGCCAAATCTATGGGATTCACTACTTCAATAAAAAACAGCAGACGCTCGAAGAAAACAAAAGAATTTATTGATGCCAAATTTGCATGCTCTAGGTATGGAGTTACGCCTGAGTCTGACAGTGGCAGCAGTCGAAGACCAAGTGTAAAGAAAACAGATTGCAAAGCTTGCATGCACGTGAAGAGAAAGCCAGATGGAAAATGGATCATTCACGAATTTATAAAGGAACATAATCATGAACTTTTACCAGCTTTGGCATATCATTTTCGGATTCATAGAAATGTGAAATTAGCTGAAAAGAATAATATTGATATCTTGAATGCTGTTAGTGAACGCACCAGAAAGATGTATGTTGAAATGTCAAGGCAATCTGGAGGCTGTCAAAACATCGGGTCTTTTAATAGGTATGATGAAGAAGCCATTGCGGATTTTGAATCATTGCACAAGCAGCCAGCACTTAAATCTCCTTCACCTTGGGAAAAGCAAATGTCAACAATTTATACACATGCAATATTTAAGAAATTTCAAGTTGAAGTTCTGGGTGTAGCTGGTTGTCAATCTAGGATAGAGGTTGGAGATGGAACTCTTGCAAAGTTCATAGTTCAAGATTATGAGAAGGATGAAGAGTTTTTGGTAACTTGGAATGAATTGAGCTCAGAGGTCTCTTGCTTTTGTCGATTGTTTGAATATAAAGGTTTCCTCTGTAGGCATGCTTTGAGTGTTCTCCAACGTTGTGGTTGTTCAAGTGTTCCATCTCATTATATCTTGAAGAGGTGGACGAAAGATGCCAAAATTAAGGAATCAATGGCTGATAGGACAAGAAGGATACAAACTAGGGTGCAGCGTTATAATGACTTGTGTAAACGAGCCATCGATTTAAGTGAAGAAGGATCATTATCTGAAGAGAATTACAATGTTGTTTTTCGTGCACTTGTTGACGCCTTGAAGAACTGTGTACTGGTGAATAATTCTAATAACAATGGTGCAGAAACTAGCAATAATGCCTATGGCCTTCGTGAAGCAGAAGAAAATCAGGGTCCTCTCGCTTTGAAACCAAATAAAAAGAGGAACGCAGCTAGGAAAAGAAAGGCACAATTAGAGCAGGATGTTATACTTGTTAATGCTCAAGATAGCCTGCAGCAAATGGATAATCTCAGCTCGGATGCAATGACCCTTAATGGATATTATGGTACCCAGCAGAATGTGCAAGGACTGCAGGTACAATTGAACTTAATGGAGCCGCCTCATGATGGTTACTATGTTAATCAACAGGGCATGCAAGGCCTGGGTCCTTTGAATTCCATGGCTCCAAGCCATGATGGGTTTTTTGGAACACAGCAAGGAATTCATGGGCTGGTAGAGGAGGGCAATTGGAATTTCGTCCATCAACTACTTTTGGATATAGCCTTCAGGTTTGCGGACGAAATAGACCATATACATACAGATGAACCTGATCCCCAGTTTCATGGCAACAGTTCAAGAAATACTTAG 1647 0.4019 MGDALNEVQHRGGVPASSPKRDIALFEGDKDFEPHNGIEFESHEAAYLFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDSGSSRRPSVKKTDCKACMHVKRKPDGKWIIHEFIKEHNHELLPALAYHFRIHRNVKLAEKNNIDILNAVSERTRKMYVEMSRQSGGCQNIGSFNRYDEEAIADFESLHKQPALKSPSPWEKQMSTIYTHAIFKKFQVEVLGVAGCQSRIEVGDGTLAKFIVQDYEKDEEFLVTWNELSSEVSCFCRLFEYKGFLCRHALSVLQRCGCSSVPSHYILKRWTKDAKIKESMADRTRRIQTRVQRYNDLCKRAIDLSEEGSLSEENYNVVFRALVDALKNCVLVNNSNNNGAETSNNAYGLREAEENQGPLALKPNKKRNAARKRKAQLEQDVILVNAQDSLQQMDNLSSDAMTLNGYYGTQQNVQGLQVQLNLMEPPHDGYYVNQQGMQGLGPLNSMAPSHDGFFGTQQGIHGLVEEGNWNFVHQLLLDIAFRFADEIDHIHTDEPDPQFHGNSSRNT 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03369 548 Pfam FAR1 DNA-binding domain 49 135 IPR004330 -
Vimu3g03369 548 ProSiteProfiles Zinc finger SWIM-type profile. 262 298 IPR007527 GO:0008270
Vimu3g03369 548 MobiDBLite consensus disorder prediction 1 20 - -
Vimu3g03369 548 SMART 26again6 273 300 IPR006564 GO:0008270
Vimu3g03369 548 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 27 158 IPR031052 GO:0006355
Vimu3g03369 548 Pfam SWIM zinc finger 264 297 IPR007527 GO:0008270
Vimu3g03369 548 Coils Coil 408 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03369 Vimu-Chr3 46999084 47002095 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu3g03369 FAR1 1.9e-29 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03369 - - gmx:100805377 605.52