Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03360 ATGGGCGGCCGGCGACAGTGCCAAGGCTTCTCCTGCGAATTCTTAAGCTACCGTGTTTTTGGATCGAAACCTCTTCCGCGGCGCCGCAATGGGACACTCCAACGTTTGGAACTCTCACCCCAAGAACTATGGTCCTGGTTCTCGTACTTGGTTGGTTTAGATGCGATGGGCGCATTTGATGTTGTTAATCACATCCGTGTGTGTGGAAACCCACATGGATTGATCAGGAAGTATGGCCTTATGTGCTGCAGGCAGTGCTTCCGTAGCAATGCCAAGGAGATTGGCTTCATCAAGGTTGATTTGCTTTTGAGTCATGTAGCTGTCTTGCTGTTTGTTCTAATTACATATTTTGTTGTTGTTGCAGTATCGTTAAGGAGCTCGTCACCTCCCTACCAATGTTATTTTCTGGCCCTAGGATGTTCTGAGGATGTTATGTTTGAAGATACTTGA 450 0.4711 MGGRRQCQGFSCEFLSYRVFGSKPLPRRRNGTLQRLELSPQELWSWFSYLVGLDAMGAFDVVNHIRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVDLLLSHVAVLLFVLITYFVVVAVSLRSSSPPYQCYFLALGCSEDVMFEDT 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03360 149 FunFam 40S ribosomal protein S29 55 100 - -
Vimu3g03360 149 PANTHER 40S RIBOSOMAL PROTEIN S29 64 99 IPR039744 GO:0003735|GO:0008270
Vimu3g03360 149 Gene3D 30s Ribosomal Protein S14; Chain N 51 100 IPR043140 -
Vimu3g03360 149 Pfam Ribosomal protein S14p/S29e 66 98 IPR001209 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03360 66 98 Cytoplasmic Ribosomal Protein Gene Family AT4G33865 93.939 1.44e-16 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03360 K02980 - smil:130987758 78.5666