Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03358 ATGGCATCTGCGGTTTCCCCTGCGACGGGGCGAGAGTTGTCGAATCCTCCATCGGACGGCATAACGAATCTCCGATTCTCAAATCACAGCGACCATCTCTTGGTCTCCTCATGGGACAAGAGTGTGCGGCTGTATGATGCGAGCGCTAATGTGTTGAGAGGAGAGTTCATGCACGCTGGCCCTGTTCTCGATTGCTGCTTCCACGACGATTCCTCTGGTTTCAGTGCTGCAGCCGACAACACTAAGTTGCATCAAGAAAACACCTTCGGTAGAGGCTTGTTTGTAGTTGCTGGTTACCACTCCAATAAAGAGGATATTCTGGGGAGGCATGACGCACCTGTTCGTTGTGTTGAGTACTCGTATGCTGCAGGCCAACTGATCACTGGTAGTTGGGACAAAACGCTGAAATGCTGGGACCCTAGAGGCGCCAGTGGACAGGAGCGCACACTAGTTGGGACATATCCACAACCTGAGCCAACAGCTGGAAGACATGTCAATATCTATGATTTGAGGAACATGTCTCAACCTGAGCAAAAAAGAGAATCTTCATTGAAATATCAAACCAGATGTGTTCGCTGTTACCCTAATGGAACAGGATATGCACTTAGTTCTGTTGAGGGCCGGGTTGCAATGGAATTCTTTGACCTCTCAGAGGCTAGCCAAGCGAAAAAATATGCTTTCAAGTGTCACAGAAAATCGGAAGCTGGAAGGGACATAGTCTATCCTGTAAATGCAATTGCATTCCACCCCATATATGGCACATTTGCCACGGGAGGTTGTGATGGGTATGTTAACGTATGGGACGGAAACAATAAAAAGAGGCTATACCAGTACTCTAAATATCCAACTAGCGTTGCCGCACTTTCGTTTAGCAGAGATGGACGCCTGTTGGCTGTTGCATCAAGTTACACTTTCGAAGAAGGACCTAAAAGCAACGAATCGGATGCTATTTTCGTTCGTAGTGTAAACGAGATTGAGGTGAAGCCGAAGCCCAAAGTCTATCCGAATCCTCCAGCGTGA 1020 0.4784 MASAVSPATGRELSNPPSDGITNLRFSNHSDHLLVSSWDKSVRLYDASANVLRGEFMHAGPVLDCCFHDDSSGFSAAADNTKLHQENTFGRGLFVVAGYHSNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPEPTAGRHVNIYDLRNMSQPEQKRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPIYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSVAALSFSRDGRLLAVASSYTFEEGPKSNESDAIFVRSVNEIEVKPKPKVYPNPPA 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03358 339 Pfam WD domain, G-beta repeat 19 46 IPR001680 GO:0005515
Vimu3g03358 339 Pfam WD domain, G-beta repeat 107 139 IPR001680 GO:0005515
Vimu3g03358 339 Pfam WD domain, G-beta repeat 227 268 IPR001680 GO:0005515
Vimu3g03358 339 FunFam Mitotic checkpoint protein bub3, putative 6 332 - -
Vimu3g03358 339 PRINTS G protein beta WD-40 repeat signature 126 140 IPR020472 -
Vimu3g03358 339 PRINTS G protein beta WD-40 repeat signature 255 269 IPR020472 -
Vimu3g03358 339 PRINTS G protein beta WD-40 repeat signature 33 47 IPR020472 -
Vimu3g03358 339 MobiDBLite consensus disorder prediction 1 20 - -
Vimu3g03358 339 PANTHER MRNA EXPORT FACTOR AND BUB3 7 325 - -
Vimu3g03358 339 ProSiteProfiles Trp-Asp (WD) repeats profile. 243 277 IPR001680 GO:0005515
Vimu3g03358 339 Gene3D - 3 333 IPR015943 GO:0005515
Vimu3g03358 339 SMART WD40_4 220 268 IPR001680 GO:0005515
Vimu3g03358 339 SMART WD40_4 49 85 IPR001680 GO:0005515
Vimu3g03358 339 SMART WD40_4 6 46 IPR001680 GO:0005515
Vimu3g03358 339 SMART WD40_4 100 139 IPR001680 GO:0005515
Vimu3g03358 339 SUPERFAMILY WD40 repeat-like 16 302 IPR036322 GO:0005515
Vimu3g03358 339 ProSiteProfiles Trp-Asp (WD) repeats profile. 107 139 IPR001680 GO:0005515
Vimu3g03358 339 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 107 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03358 Vimu-Chr3 46958412 46961605 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03358 107 301 U-box Gene Family AT2G33340 23.590 8.51e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03358 K02180 - gmx:100808389 598.586