Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03356 ATGAGCTGCAATGGTTGTCGTGTTCTCAGAAAGGGTTGCAGTGAGAACTGCATGCTACGACATTGCCTACAATTGATAGAGAACCCACAAGCCCAAGCTCACGCCACCCTCTTTGTGGCCAAGTTCTTTGGCCGTGCTGCTCTCATGTCGTTCCTTTCCGCCGTACCTGCCAACCAAAGATCCGTGGGGCGTACTATAAATCCAGTGAATGGAGCAGTGGGGTTGTTGTGGAGTGGGAACTGGCAGCTGTGCCAAATGGGTGTGGAGAAAGTGCTCCGAGGTGATGCTGCGTTGACCCCACTCCCTCACTTCCTCAGTAGTGTAGATGTGCACCATCAACACCATGTAACTGAGAGAGTGATGATTGCAGGTGGAACATTGTGTCACCAGGCAAAGAAGCAACGTGTGGGGACACCCTCCCAGGAATCTGAGACCTTTTATATGGGACGTAAACCACAGGATTCTGCCCCTCAAAGTCAAATGAACCTCCTTACACTATTCTTCTGA 507 0.5089 MSCNGCRVLRKGCSENCMLRHCLQLIENPQAQAHATLFVAKFFGRAALMSFLSAVPANQRSVGRTINPVNGAVGLLWSGNWQLCQMGVEKVLRGDAALTPLPHFLSSVDVHHQHHVTERVMIAGGTLCHQAKKQRVGTPSQESETFYMGRKPQDSAPQSQMNLLTLFF 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03356 168 ProSiteProfiles LOB domain profile. 1 97 IPR004883 -
Vimu3g03356 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 131 - -
Vimu3g03356 168 Pfam Lateral organ boundaries (LOB) domain 2 89 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03356 Vimu-Chr3 46945286 46946486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03356 1 106 AS2 family AT3G49940 65.517 1.24e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu3g03356 LOB 5.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03356 - - gmx:100816269 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03356 3 46945286 46946486 Vimu3g03356 3 46945286 46946486 ECH
Vimu7g02747 7 23143839 23144651 Vimu3g03356 3 46945286 46946486 PCT