Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03354 ATGGCTTTGGAGGCTTTGAATTCTCCAACAGCACCCGCCGCTCCCTTCCGTGCCTATCAAGAAGAGGAGGACCTTGATCTTCAGTTCCGCGAGCCTTGGTCTAAAAGGAAACGATCCAAACGACCGCGTCTTGAGACCGAGGAAGAGTACCTCGCTCTTTGCCTCATCATGCTCGCGCAGGGCGGCAACAACACCAACACCAACTCCAACACTTCCTCCCACCGCCAAACTCAACAATCAGACTCTCAGAAAGAACCGTCACCGCCGCTCAAGTTATCCCACAGGTGCACCGTTTGCAACAAGGCCTTTCCTTCCTATCAAGCTCTCGGTGGACACAAGGCCAGCCACCGCAAGTCTTCGTCGGAATCTACCTCTGCCTCCGCCGTCGCCAGCGACAGCGTCACCGCTTCCACCGTCGGCGGCGGAAGGATGCACGAGTGTTCCATCTGTCACAAGAGTTTCCCCACTGGCCAGGCCCTTGGTGGCCACAAGCGCTGCCACTACGACGGTGGAAACCATCACAGTAACAGTAACGCCCTCACTTCCTCCTCCGATGGCGTTGGCGGCGGTGCTGCCTCCTCCCACACGCTCCGTGGGTTCGACCTGAACCTTCCGGCGCCCCTCACGGAGTTCTGGCCGCCGGTGGGGTTCGACTTGAGGAAGAAAGTCGGCGGAGGCGACGAGCAAGAGGTGGAAAGCCCGTTGCCAATAACCGCCGCCAAGAAGGCGCGTTTGTTTTCGGGGGATGACGATCAAACGGCGTAG 765 0.5895 MALEALNSPTAPAAPFRAYQEEEDLDLQFREPWSKRKRSKRPRLETEEEYLALCLIMLAQGGNNTNTNSNTSSHRQTQQSDSQKEPSPPLKLSHRCTVCNKAFPSYQALGGHKASHRKSSSESTSASAVASDSVTASTVGGGRMHECSICHKSFPTGQALGGHKRCHYDGGNHHSNSNALTSSSDGVGGGAASSHTLRGFDLNLPAPLTEFWPPVGFDLRKKVGGGDEQEVESPLPITAAKKARLFSGDDDQTA 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03354 254 MobiDBLite consensus disorder prediction 110 139 - -
Vimu3g03354 254 MobiDBLite consensus disorder prediction 62 91 - -
Vimu3g03354 254 MobiDBLite consensus disorder prediction 1 22 - -
Vimu3g03354 254 SMART c2h2final6 145 167 IPR013087 -
Vimu3g03354 254 SMART c2h2final6 94 116 IPR013087 -
Vimu3g03354 254 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 37 206 IPR044653 GO:0003700
Vimu3g03354 254 MobiDBLite consensus disorder prediction 120 138 - -
Vimu3g03354 254 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Vimu3g03354 254 Gene3D Classic Zinc Finger 91 167 - -
Vimu3g03354 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 145 167 IPR013087 -
Vimu3g03354 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Vimu3g03354 254 ProSitePatterns Zinc finger C2H2 type domain signature. 147 167 IPR013087 -
Vimu3g03354 254 SUPERFAMILY beta-beta-alpha zinc fingers 94 167 IPR036236 -
Vimu3g03354 254 MobiDBLite consensus disorder prediction 62 87 - -
Vimu3g03354 254 Pfam C2H2-type zinc finger 145 169 - -
Vimu3g03354 254 Pfam C2H2-type zinc finger 94 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03354 Vimu-Chr3 46923828 46925271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03354 1 245 C2H2 Transcription Factor Family AT1G27730 44.186 1.30e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu3g03354 zf-C2H2_6 1.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03354 - - vum:124819975 425.631