Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03352 ATGGCTTCTGCGGTGGCCGCCGCGGCGGGGCAAGAGTTGTCGAATCCTCCATCGGACGGAATAACGAATCTTCGATTCTCAAATCACAGCGATAATCTCTTGGTCTCCTCATGGGACAAGAGTGTGAGGTTGTACGAAGCGAGCGCCAATGTGTTGAGAGGAGAGTTTATGCACGCTGGCCCCGTTCTCGATTGCTGCTTCCACGACGATTCCTCCGGCTTCAGTGTCGCCGCCGACAACACTGTCAGACGCTCTAATAAAGAGGATATCCTAGGAAGGCATGATGCGCCTGTTCGTTGTGTTGAGTACTCCTATGCTGCAGGGCAATTGATCACTGGTAGTTGGGACAAAACCCTGAAATGCTGGGACCCTAGAGGTACAAGTGGCCAAGGGCGCACACTCGTTGGGACATATCCACAGCCTGAGCGTGTTTACTCTCTCTCTCTGGTTGGAAATCGCCTGGTTGTAGCAACAGCTGGAAGACATGTTAATATCTATGATTTGAGGAACATGTCTCAACCTGAACAGAAAAGAGAATCTTCATTGAAATATCAAACTAGATGTGTGCGCTGTTACCCTAATGGAACAGGATATGCACTTAGTTCAGTGGAAGGGCGTGTCTCGATGGAATTCTTTGACCTCTCAGAAGCTATCCAGGCAAAAAAATATGCTTTCAAGTGTCACAGAAAATCCGAGGCCGGAAGGGACATTGTCTATCCCGTAAATGCAATTGCATACCACCCCATATATGGAACGTTTGCCACAGGTGGTTGTGACGGGTATGTTAACGTGTGGGACGGAAACAATAAGAAGAGGCTATACCAGTACACGAAATATCCCACCAGCATTGCTGCACTGTCGTTTAGCAGAGATGGACGCCTGTTAGCTGTTGCATCAAGTTACACATTCGAAGAAGGACCTATAAGCAACGAATCAGATGCTATTTTCGTCCGTAGTGTAAACGATATTGAGGTGAAGCCGAAGCCCAAAGTCTATCCCAATCCTCCAGCGTAA 1014 0.4822 MASAVAAAAGQELSNPPSDGITNLRFSNHSDNLLVSSWDKSVRLYEASANVLRGEFMHAGPVLDCCFHDDSSGFSVAADNTVRRSNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGTSGQGRTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNIYDLRNMSQPEQKRESSLKYQTRCVRCYPNGTGYALSSVEGRVSMEFFDLSEAIQAKKYAFKCHRKSEAGRDIVYPVNAIAYHPIYGTFATGGCDGYVNVWDGNNKKRLYQYTKYPTSIAALSFSRDGRLLAVASSYTFEEGPISNESDAIFVRSVNDIEVKPKPKVYPNPPA 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03352 337 PANTHER MRNA EXPORT FACTOR AND BUB3 10 322 - -
Vimu3g03352 337 Pfam WD domain, G-beta repeat 19 45 IPR001680 GO:0005515
Vimu3g03352 337 Pfam WD domain, G-beta repeat 91 123 IPR001680 GO:0005515
Vimu3g03352 337 Pfam WD domain, G-beta repeat 225 266 IPR001680 GO:0005515
Vimu3g03352 337 Gene3D - 7 331 IPR015943 GO:0005515
Vimu3g03352 337 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 275 IPR001680 GO:0005515
Vimu3g03352 337 ProSiteProfiles Trp-Asp (WD) repeats profile. 91 123 IPR001680 GO:0005515
Vimu3g03352 337 FunFam Mitotic checkpoint protein bub3, putative 6 330 - -
Vimu3g03352 337 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 91 123 - -
Vimu3g03352 337 SMART WD40_4 6 46 IPR001680 GO:0005515
Vimu3g03352 337 SMART WD40_4 49 86 IPR001680 GO:0005515
Vimu3g03352 337 SMART WD40_4 131 167 IPR001680 GO:0005515
Vimu3g03352 337 SMART WD40_4 87 123 IPR001680 GO:0005515
Vimu3g03352 337 SMART WD40_4 224 266 IPR001680 GO:0005515
Vimu3g03352 337 SUPERFAMILY WD40 repeat-like 16 300 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03352 Vimu-Chr3 46909533 46912555 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03352 91 299 U-box Gene Family AT2G33340 23.832 8.32e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03352 K02180 - gmx:100808389 619.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03352 3 46909533 46912555 Vimu3g03352 3 46909533 46912555 ECH