Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03349 ATGGAATCTTCTCAACAGATTTCTGAAGAATGGGGTTCTCTTTGTGGATTGCACACAACTGAAGAAGCTGACTTTATGGCTCAGTTGTTTCCTGGTACTTACTGTTCTGTCACAGAAAAGCACTACGGAAATACCACCACTTTTGGCGTTTGGCCTGCCCATGAATCCACAAAAGTGACCATGAAAGCCACTAATAACAACTCATACTTCCTTCCAAATGTTACAGACATTAATTTTTGTTTCTCACAAGGGAGTAGCTCCAGCAGTGACAGTGGTAATAGTATCTTTTCCACTACAAGTAGTGGAACCCACTACTGTGATCCAGCAACAAACTTTGACTCAGTGTCCATGGCCTTTTTCCTGGGAGATGCCCAATTCAGTCCCCATACTTTTCACTGTTACGATAACTCAAGCCAACAGATAAATGAAAACACTGATGAAGAGTCAAGTCTTGACCCAGTAACTCTTGCTGACAACAATTTGCAGGCTAAGAGAGAGTATGAGATGATGGTTTCTGAATATGCACACGAGGACAGAAGTGAAAACATGGAGAACCTAACAAAAAGGTTTAGGAACTCAAAAGAGGTCTCAAAAACATTGAGGAATACCAAGTTAAAGAAAAATTCAAAATCTGCTTCAATAAACAAGAATGAAGATGACAGAAGCTTGAACCTCGAAGGGCTTGGCTGTTTTTCACAGGGTGACTCTAATGCTTCTCTGAAGCCAAATGGAGGAGCATTGAAAGATCCTGCACCTCCCAGTTTGCTTAGAAAATCAAGAGCAACTAAGGGTCCTGCTACTGATCCACAGAGCCTCTATGCAAGAAAGAGAAGAGAAAGAATAAATGAAAGGTTGAGAATACTGCAAAGTCTTGTCCCCAATGGAACTAAGGTGGATATCAGCACCATGCTTGATGAAGCAGTGCAATACGTTAAGTTTTTACAGCTCCAAATCAAGACTGGCTTGAGAACAAGGCGAACAAGCGAAAGTTTGGAAAGAAATTGGGAGTGTAGGTTCCGCAAGACATGCTTGTGTAAAACTTTTGGTTTTCAAAAGCCATGGCTGAAAGTTTGGGAAGAGATTGTGGAAGAAAACGGGTTGATGGACTTGCTTTTTGGTGAACAGTGGGGTTCTTCTTCAATAACAGTAGTAGAAGAAGAAGAGTCACACCCAAGAAAGAAAATGGATCCTACTGAGCAAATTTCTGAAGAATGGAGTTCTCTCAGTGGTTTTTGCACAGCTGAGGAAGCCGACTTCATGAGCCAGTTGCTTGACAACTGCTCACTCCCTGAAAATCTGTGTGGAAATTTCCACTTGGGAATTCCGTCTGCGACATGGCCTGGCCATGAATCAACAATACTGACCGTGACAAGCATCAATGACAGTCCATATTTTCCTACAACCGCTGATAATAATAATAGTAATAGTAATTATTTATGTTTTTCTCAAGGAAGTTGCTCCACTTCTGATAGTAGCAATATATTTCCTGCTACAAGTGGCCATAAACACTGCTTGAACGACCAAGTAGCCAACATTGGCTACGTGTCCATGGGTTTTGCCAACTTCAGCCCGTATAATGTACAAGGGAGTGACAGCCAACAGATGAATGGAAACACTGATCAAGATTTAGGTCCAGAGGTTATTGCTGACAAGAACTCCCAGGATCACCAGGAATGTGAAGTACTAGTTTCTGAAGCAGCAACAGAGGATATAACCACCAATCTGGAGAAGTTGGGGAAAAGATCTAGGGGCTCAATGCAGGTACGAAAGAGCAAGAAAAATGCTAAATCCGTGAAGAAACCAAAATCTGATTCTATAAGTAACTCTGAAGAGGGTAGAAGTCCTGATCTTCAAGGTTGCTGCTCAGATGATGATGACTCTAATGCTTCTCAAGAGCTAAATGGAGGAGGATCTCCAAATCTGAGCCTGGAGGATTCTACATCCCTTAAGTTGAAGGGGAAAAAATCAACAGCTAGTAGAGGTTCTGCTACTGATCCACAAAGTGTATATGCAAGGAGAAGAAGAGAAAGAATAAATGAAAGATTGAAAATCCTACAAAACCTTGTCCCGAACGGAACCAAGGTGGATATCAGCACCATGCTTGAGGAAGCCGTTCAATATGTGAAGTTTTTACAGCTCCAAATTAAGGTAACAACTTTAGTTGAGCTTCTGAGCTCTGATGATCTTTGGATGTACGCTCCTATTGCTTACAATGGAATGAACATTGGACTAGACCTCAATATTACCCCAACCAAACAGCCATAA 2265 0.4159 MESSQQISEEWGSLCGLHTTEEADFMAQLFPGTYCSVTEKHYGNTTTFGVWPAHESTKVTMKATNNNSYFLPNVTDINFCFSQGSSSSSDSGNSIFSTTSSGTHYCDPATNFDSVSMAFFLGDAQFSPHTFHCYDNSSQQINENTDEESSLDPVTLADNNLQAKREYEMMVSEYAHEDRSENMENLTKRFRNSKEVSKTLRNTKLKKNSKSASINKNEDDRSLNLEGLGCFSQGDSNASLKPNGGALKDPAPPSLLRKSRATKGPATDPQSLYARKRRERINERLRILQSLVPNGTKVDISTMLDEAVQYVKFLQLQIKTGLRTRRTSESLERNWECRFRKTCLCKTFGFQKPWLKVWEEIVEENGLMDLLFGEQWGSSSITVVEEEESHPRKKMDPTEQISEEWSSLSGFCTAEEADFMSQLLDNCSLPENLCGNFHLGIPSATWPGHESTILTVTSINDSPYFPTTADNNNSNSNYLCFSQGSCSTSDSSNIFPATSGHKHCLNDQVANIGYVSMGFANFSPYNVQGSDSQQMNGNTDQDLGPEVIADKNSQDHQECEVLVSEAATEDITTNLEKLGKRSRGSMQVRKSKKNAKSVKKPKSDSISNSEEGRSPDLQGCCSDDDDSNASQELNGGGSPNLSLEDSTSLKLKGKKSTASRGSATDPQSVYARRRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKVTTLVELLSSDDLWMYAPIAYNGMNIGLDLNITPTKQP 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03349 754 CDD bHLH_AtIND_like 266 319 - -
Vimu3g03349 754 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 662 718 IPR036638 GO:0046983
Vimu3g03349 754 Gene3D - 662 719 IPR036638 GO:0046983
Vimu3g03349 754 MobiDBLite consensus disorder prediction 234 275 - -
Vimu3g03349 754 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 267 321 IPR036638 GO:0046983
Vimu3g03349 754 MobiDBLite consensus disorder prediction 176 219 - -
Vimu3g03349 754 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 482 718 IPR045843 GO:0003700|GO:0006355
Vimu3g03349 754 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 265 314 IPR011598 GO:0046983
Vimu3g03349 754 FunFam Basic helix-loop-helix transcription factor 663 720 - -
Vimu3g03349 754 Gene3D - 269 322 IPR036638 GO:0046983
Vimu3g03349 754 SMART finulus 271 320 IPR011598 GO:0046983
Vimu3g03349 754 SMART finulus 668 717 IPR011598 GO:0046983
Vimu3g03349 754 FunFam Basic helix-loop-helix transcription factor 266 322 - -
Vimu3g03349 754 MobiDBLite consensus disorder prediction 574 674 - -
Vimu3g03349 754 MobiDBLite consensus disorder prediction 176 202 - -
Vimu3g03349 754 MobiDBLite consensus disorder prediction 610 666 - -
Vimu3g03349 754 Pfam Helix-loop-helix DNA-binding domain 275 315 IPR011598 GO:0046983
Vimu3g03349 754 Pfam Helix-loop-helix DNA-binding domain 672 712 IPR011598 GO:0046983
Vimu3g03349 754 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 662 711 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03349 Vimu-Chr3 46881191 46889510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03349 404 748 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 37.500 1.85e-49 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu3g03349 HLH 7.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03349 - - gmx:100817334 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02169 7 19174402 19175592 Vimu3g03349 3 46881191 46889510 PCT