Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03338 GACGCAAGAAGAGAGAGAAAGAGCAAAAGAAATTCTTGCAGAAGGGTGCAATCTTTCTCTCTCGTTCTTTCTTTCTCATCAGCCTTTGGTGATAGACAGAAAGAAGCCATGGCCAGCTTCGGAGGAACCACACAGAAGTGCATGGCTTGTGACAAAACCGTGTACCTTGTTGATAAGCTAACTGCTGATGGCCGTGTCTATCACAAGGCCTGCTTCAGATGCCACCATTGCCGCAGTACCCTTAAGCTGAGCAACTACTGTTCTTTTGAGGGGGTGCTATATTGCAGACCTCATTATGATCAACTTTACAAGCGAACTGGCAGCTTGGACAAAAGCTTCGAAGGAACACCCAAAGTTCAGAAACCAGAGAAACCAATCACTGAAAATGAGAACACTAAGGGCATTGCAAACGTGTTCTTGGGTACCAGAGACAAATGTGTGTGCTGCAAAAAGACAGTGTATCCCACTGAGAGGGTAACCGTCAATGGGACACCCTACCATAAAAGCTGCTTCAAATGTACCTATGGAGGTTGCACTATAAGCTCATCAAACTTCATCACACACGAGGGAAAGCTGTACTGCAAACACCATCACATTCAACTATTCAAAGAGAAGGGTAATTACAGTCAGCTTGAGAATGACCAAGTTGCTACCACGGAAGTCGTTGCTTGA 672 0.4524 DARRERKSKRNSCRRVQSFSLVLSFSSAFGDRQKEAMASFGGTTQKCMACDKTVYLVDKLTADGRVYHKACFRCHHCRSTLKLSNYCSFEGVLYCRPHYDQLYKRTGSLDKSFEGTPKVQKPEKPITENENTKGIANVFLGTRDKCVCCKKTVYPTERVTVNGTPYHKSCFKCTYGGCTISSSNFITHEGKLYCKHHHIQLFKEKGNYSQLENDQVATTEVVA 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03338 223 CDD LIM1_SF3 43 105 - -
Vimu3g03338 223 ProSitePatterns LIM zinc-binding domain signature. 47 81 IPR001781 -
Vimu3g03338 223 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 172 211 - -
Vimu3g03338 223 ProSiteProfiles LIM domain profile. 144 204 IPR001781 -
Vimu3g03338 223 ProSiteProfiles LIM domain profile. 45 105 IPR001781 -
Vimu3g03338 223 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 138 171 - -
Vimu3g03338 223 SMART lim_4 46 98 IPR001781 -
Vimu3g03338 223 SMART lim_4 145 197 IPR001781 -
Vimu3g03338 223 FunFam LIM domain and actin-binding 1 41 111 - -
Vimu3g03338 223 Gene3D Cysteine Rich Protein 42 111 - -
Vimu3g03338 223 Gene3D Cysteine Rich Protein 141 210 - -
Vimu3g03338 223 FunFam LIM domain and actin-binding 1 140 210 - -
Vimu3g03338 223 PANTHER OS06G0237300 PROTEIN 8 128 - -
Vimu3g03338 223 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 73 113 - -
Vimu3g03338 223 Pfam LIM domain 146 201 IPR001781 -
Vimu3g03338 223 Pfam LIM domain 47 101 IPR001781 -
Vimu3g03338 223 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 40 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03338 Vimu-Chr3 46804822 46806072 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vimu3g03338 LIM 4.3e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03338 K09377 - gmx:100306027 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03338 3 46804822 46806072 Vimu3g03338 3 46804822 46806072 ECH