Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03334 ATGTCTCACTCGCCGGACTCTCCCTCCGCCGCCGCTAACTTCCTCTGCCGCCAACGCGCCACCGAGTTTGCCTCCGACCAACATCCCCCTCCAACCCCTCCCTTTCCGGATTCCGATGACTCGCCCGTCGCCGGCCTCCTCGATGCCGAGGTCCACCACATGCCGGAGAAGGACTACCTCCGCCGCTGCCGCGACCGCTCCATCGACGTCACCGCGCGCCTCGACGCCGTCAACTGGATCTTAAAGGTTCAAGCATTCTACAAGTTTTCTCCGGTGACGGCGTTTCTCTCCGTCAACTATTTGGACCGTTTCCTCTCTCTATGTTCTCTTCCCCAATCGAGTGGGTGGCCGTTTCAGCTGATATCAGTGGCATGCCTGTCTCTGGCAGCAAAAATGGAAGAGTCTCATGTCCCGTTCTTACTGGACCTGCAACTGTTCGAACCCAAATTTATCTTTGCTCCCAAAACTATTCAAAGAATGGAGCTTTGGGTCATGTCCAATCTCAAATGGAGGCTTCGCTCCGTCACGCCCTACGATTATCTTAACCATTTCATCACCCAGCTCCCTTCCTCCTCTTCTTCCGAATCCACAAAGCACTGTTTCTCCACCGCCTCCAATCTGATCCTCAGCACCACCCGCGTGATTAACTTCTTGGGATTCGCGCCCTCCACAGTAGCAGCCGCCGCCGTGCTCTGTTCGGCTGGCCGTGACATTGCTTCCGCCAATGGCCAATTGTCGCTGAGTTTCCATGATAGAGTAAACGAGGAAATGGTGAGATGCTGTCACCAACTAATGGAGGAGTACGTGGTGGACACGTGTTATGCATCCAGCTCCACCATCAAAGAGAGAGTAGCCGAGCCACCTCCGTGCAGTCCCGTCGGCGTGCTGGACGCTGCCAACTGTACCAGCTGCGACACACCTTCCGAGAGGATTTTCTTAGGCTCGACAGAGGAACAACGGCGAGAAGCCGAGCCACCAAATAAACGGCTTCGATCCTCTGCTCCAGATGCACCACAGCAGTAG 1023 0.5572 MSHSPDSPSAAANFLCRQRATEFASDQHPPPTPPFPDSDDSPVAGLLDAEVHHMPEKDYLRRCRDRSIDVTARLDAVNWILKVQAFYKFSPVTAFLSVNYLDRFLSLCSLPQSSGWPFQLISVACLSLAAKMEESHVPFLLDLQLFEPKFIFAPKTIQRMELWVMSNLKWRLRSVTPYDYLNHFITQLPSSSSSESTKHCFSTASNLILSTTRVINFLGFAPSTVAAAAVLCSAGRDIASANGQLSLSFHDRVNEEMVRCCHQLMEEYVVDTCYASSSTIKERVAEPPPCSPVGVLDAANCTSCDTPSERIFLGSTEEQRREAEPPNKRLRSSAPDAPQQ 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03334 340 FunFam D2/4-type cyclin 56 169 - -
Vimu3g03334 340 CDD CYCLIN_AtCycD-like_rpt2 175 265 - -
Vimu3g03334 340 Pfam Cyclin, C-terminal domain 175 276 IPR004367 -
Vimu3g03334 340 SMART cyclin_7 78 166 IPR013763 -
Vimu3g03334 340 SUPERFAMILY Cyclin-like 177 271 IPR036915 -
Vimu3g03334 340 PANTHER CYCLINS 47 275 IPR039361 -
Vimu3g03334 340 SMART Cyclin_C_2 175 293 IPR004367 -
Vimu3g03334 340 MobiDBLite consensus disorder prediction 314 329 - -
Vimu3g03334 340 MobiDBLite consensus disorder prediction 22 41 - -
Vimu3g03334 340 ProSitePatterns Cyclins signature. 73 104 IPR006671 -
Vimu3g03334 340 Gene3D - 56 173 - -
Vimu3g03334 340 Gene3D - 46 266 - -
Vimu3g03334 340 FunFam D6-type cyclin 170 263 - -
Vimu3g03334 340 Pfam Cyclin, N-terminal domain 48 172 IPR006671 -
Vimu3g03334 340 SUPERFAMILY Cyclin-like 39 172 IPR036915 -
Vimu3g03334 340 CDD CYCLIN_AtCycD-like_rpt1 72 170 - -
Vimu3g03334 340 MobiDBLite consensus disorder prediction 308 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03334 Vimu-Chr3 46770357 46771926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03334 43 272 Core Cell Cycle Gene Families AT1G70210 44.681 2.23e-62 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03334 K18810 - gmx:100776178 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03334 3 46770357 46771926 Vimu3g03334 3 46770357 46771926 ECH