Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03319 ATGTCTTCGGATACAAAGAAAAGCCGTGGCCGTCAGAAGATCGAGATGAAGAAAATGAGCAACGAGAGCAACCTCCAAGTTACCTTCTCCAAGCGCCGTACCGGCCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGCTGCTGACGTTGCACTCGTTGTGTTCTCCCCCGGAGAGAAGGTCTTCTCCTTCGGTCACCCCAACGTCGACGCCGTCATTGACCGCTACCTCGCGCGGGCCCCGCCGCAGGACATGGGCACCATGCAGTTCATCGAGGCTCAGCGCCTGGCCAACGTGCGTGAC 306 0.5817 MSSDTKKSRGRQKIEMKKMSNESNLQVTFSKRRTGLFKKASELCTLCAADVALVVFSPGEKVFSFGHPNVDAVIDRYLARAPPQDMGTMQFIEAQRLANVRD 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03319 102 PANTHER MADS BOX PROTEIN 11 84 - -
Vimu3g03319 102 FunFam Agamous-like MADS-box protein AGL62 21 87 - -
Vimu3g03319 102 MobiDBLite consensus disorder prediction 1 22 - -
Vimu3g03319 102 MobiDBLite consensus disorder prediction 1 18 - -
Vimu3g03319 102 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Vimu3g03319 102 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Vimu3g03319 102 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Vimu3g03319 102 CDD MADS_MEF2_like 10 78 IPR033896 GO:0000977|GO:0045944
Vimu3g03319 102 Gene3D - 21 90 IPR036879 GO:0003677|GO:0046983
Vimu3g03319 102 SUPERFAMILY SRF-like 10 83 IPR036879 GO:0003677|GO:0046983
Vimu3g03319 102 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Vimu3g03319 102 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Vimu3g03319 102 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03319 Vimu-Chr3 46661412 46661796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03319 5 102 Type I MADS-box Gene Family AT5G60440 70.000 4.09e-45 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu3g03319 SRF-TF 1.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03319 - - pvu:PHAVU_007G047900g 177.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03319 3 46661412 46661796 Vimu3g03319 3 46661412 46661796 ECH