Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03316 ATGTCGAAGAATAAAAAGTGTAGCTTGGGTCGTCAAAAGATCCCAATAGAGAAAATACCAAAAAAGAGTCATTTGCAAGTGACGTTCTCTAAACGTCGTTCAGGAGTGTTCAAGAAAGCCAGCGAACTTTGCACCCTCTGTGGGGTAGAGATCGCCATCGTCGTTTTCTCTCCTGCAGATAAGGCCTTCTCTTTTGGGCATCCAGAAGTTGAGTCCCTCATCGATCGCTACACCACGCGGAACCCTCCACAAGATTCCAGTGCGCAGCACCTCGTTGAGGCTCATCGAAACGCCAATGTTCGTGATCTCAACATGCAACTCACTCAGGTTTTTAACCTTTTGGAGGTTGAAAAGAAGCGAGGGGATGATCTGGACCATGCGAGGAAAGCTAGGCAGAAACAGTTTTGGTGGGAGAGCCCTGTCGATGAGCTTGGATTGCATGAGCTCCTCCAGTTAAAGGCCTCCACCGAGGATCTCAAGAACAACATAGAAAAACATGCCAGCAAATTCATCGTTGACCGCTCTACTGCTCTATCTTCTTCGTCAATTCTTGGACCTAGTAATGGATTTGCTGCAATCGAACGCTATGACGCCTTTGATAACAAACCTGATGTTGGGATTCCCATGGCTTCCTCACCTCCCGATGCTCATTATCTTGCTTTTCGAAATTGGTATCTTTGA 681 0.4684 MSKNKKCSLGRQKIPIEKIPKKSHLQVTFSKRRSGVFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESLIDRYTTRNPPQDSSAQHLVEAHRNANVRDLNMQLTQVFNLLEVEKKRGDDLDHARKARQKQFWWESPVDELGLHELLQLKASTEDLKNNIEKHASKFIVDRSTALSSSSILGPSNGFAAIERYDAFDNKPDVGIPMASSPPDAHYLAFRNWYL 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03316 226 SUPERFAMILY SRF-like 10 86 IPR036879 GO:0003677|GO:0046983
Vimu3g03316 226 Coils Coil 149 169 - -
Vimu3g03316 226 Gene3D - 21 89 IPR036879 GO:0003677|GO:0046983
Vimu3g03316 226 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Vimu3g03316 226 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Vimu3g03316 226 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Vimu3g03316 226 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Vimu3g03316 226 PANTHER MADS BOX PROTEIN 11 166 - -
Vimu3g03316 226 CDD MADS_MEF2_like 10 77 IPR033896 GO:0000977|GO:0045944
Vimu3g03316 226 Gene3D - 90 177 - -
Vimu3g03316 226 FunFam Agamous-like MADS-box protein AGL62 21 87 - -
Vimu3g03316 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Vimu3g03316 226 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03316 Vimu-Chr3 46630375 46631516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03316 6 207 Type I MADS-box Gene Family AT5G60440 48.780 1.62e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu3g03316 SRF-TF 3.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03316 - - gmx:100793705 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03316 3 46630375 46631516 Vimu3g03316 3 46630375 46631516 ECH