Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03311 ATGGCTCAGCTTTGGCCAAGGCTACTTTACTTTCTCTTTTGTCTTCTGATAACAAATTCTATATCTCAAGTTACAGCAGCCAACACTACACAAAACTTCCACTACTTCTGTGATCATGATAACGATAGAGGAGACTACACGGCCAACAGCACCTACCACACCAACCTCAACACCCTTTTGTCCACTCTCATTTCCAATACAGAAATCCATTACGGTTTCTACAATTTCACAAACGGCGAAAACACTGATAAAGTGTACGCCATTGGGCTGTGTAGAGGAGATGTTCAGCCAGAGAACTGCCGCACATGCCTCAACGGTTCCAGGACCAATCTCACCGAACTTTGTCCAAACCGAAAGGAAGCAATTGGTTGGTACGAGGATGAGCAGTGTATGTTGCGCTACTCAGACCGCAATATATTCGGCCTTATGGAAATTGGACCTGCTTTTTATGCTAAAAACGACAGAAATGCATCGGATTTGGATGAGTTCAATGAAGATGTCAACACCTTGCTACGTAATCTAAGCAGCATAGCTGCATCAGGTGACTCTCATGTTAAGTATGCTGCAGATGGTATATCATCAGGTTCAAAGGTCATATATGGTCTAGTTCAGTGCACACCGGACTTGGAAGAGTCAGAGTGCGCTGATTGCTTGTCTCAGTCCATTGAACGTATCCCAATAGATTGTTGTAAAGACAAGATAGGTGGTAGGGTTGTTAGACCAAGTTGTAATATGAGGTTCGAAACCTCCTTTAAGTTCTATGGAGATCCAGCATTTGTACCACCAGCTCCTCCTCCTTCCACCACCGGAAAGAGCAACGCAACTATCATAATCATAGCAGTAGCAGTACCAGTTGTTGTAATTGTTTTCGCGGTGCTTATTTTTATCTACATTCGTTTAACAGCGAGGAAGCCACGGAAAAAGTTTGAAACTCAACAAGAAGAACTAGATGATGATGATGATGGTGATGATGGAATTGACGCTTCTGAGCCATTGCAAATCAGATTTAACATCATACGAGATGCTACAAATGACTTTTCTGATTCTAATAAACTCGGACAGGGTGGATTTGGAGCTGTTTACAGGGGTACGCTACCTAATGGACAAGAGATTGCCGTCAAAAGGTTGTCAGCTAATTCTAGACAAGGAGATGCAGAGTTCAAGAATGAGGTGCTTTTAGTGGCCAAACTTCAGCACCGAAATTTAGTTAGACTACTTGGTTTCTGTATGGAAGGAAGAGAAAAGCTACTTGTCTATGAATTTGTTCCAAATAAAAGCCTTGATTACTTCATATTTGATGAAACCAAGAGAGCACAATTAGATTGGGATAGGCGATTCAAAATCATTGCAGGTACTGCTCGAGGTATTCTCTACCTCCATCAAGATTCTCGATTGCGCATTATCCATCGTGATCTCAAAGCTGGTAACATTCTCTTAGACGAAGAGATGAACCCTAAGATAGCAGATTTTGGCTTGGCAAGGTTATTTGTTGTGGACCAAACTCATGAAGATACACAGAGAGTTGTTGGGACATATGGATATATGGCACCTGAGTATGCATTGCATGGACAGTTTTCAGAGAAGTCAGATGTTTTTAGTTTTGGTGTATTGATTCTTGAGATTGTAAGTGGCCAGAAAATCAGTAGCATTCAACATGGAGAGGAAACGGGAGATCTACGCGATATTGCATGGCGAAGTTGGAAGGAAGGAAGAGCAAGAAATATTGTAGATCCTACATTAAACAATGGTTCAGAAAGTGAAATAATGAGATGCGTCCATATTGGGTTACTGTGTGTACAAGACAATGCAGCGGCGAGACCCACCATGGCTTCCGTTGTAGTCATGCTGAATAGTCATTCTTTCAGTCTGCAAGTACCTATGGCACCTGCACTTTATGGGAATGCCATGTCTGGAATCTTTGCAGACATGCAGTTATGGGAGATTAATTCAGGGACGACAAGATCAAGAGAATCCACCAATAGATCAGACCAAGATTCCATCAATGAGGCTTCAATTACAGACCCATATCCTCGCTAG 2037 0.4217 MAQLWPRLLYFLFCLLITNSISQVTAANTTQNFHYFCDHDNDRGDYTANSTYHTNLNTLLSTLISNTEIHYGFYNFTNGENTDKVYAIGLCRGDVQPENCRTCLNGSRTNLTELCPNRKEAIGWYEDEQCMLRYSDRNIFGLMEIGPAFYAKNDRNASDLDEFNEDVNTLLRNLSSIAASGDSHVKYAADGISSGSKVIYGLVQCTPDLEESECADCLSQSIERIPIDCCKDKIGGRVVRPSCNMRFETSFKFYGDPAFVPPAPPPSTTGKSNATIIIIAVAVPVVVIVFAVLIFIYIRLTARKPRKKFETQQEELDDDDDGDDGIDASEPLQIRFNIIRDATNDFSDSNKLGQGGFGAVYRGTLPNGQEIAVKRLSANSRQGDAEFKNEVLLVAKLQHRNLVRLLGFCMEGREKLLVYEFVPNKSLDYFIFDETKRAQLDWDRRFKIIAGTARGILYLHQDSRLRIIHRDLKAGNILLDEEMNPKIADFGLARLFVVDQTHEDTQRVVGTYGYMAPEYALHGQFSEKSDVFSFGVLILEIVSGQKISSIQHGEETGDLRDIAWRSWKEGRARNIVDPTLNNGSESEIMRCVHIGLLCVQDNAAARPTMASVVVMLNSHSFSLQVPMAPALYGNAMSGIFADMQLWEINSGTTRSRESTNRSDQDSINEASITDPYPR 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03311 678 MobiDBLite consensus disorder prediction 652 678 - -
Vimu3g03311 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Vimu3g03311 678 Pfam Salt stress response/antifungal 156 249 IPR002902 -
Vimu3g03311 678 Pfam Salt stress response/antifungal 37 136 IPR002902 -
Vimu3g03311 678 CDD STKc_IRAK 352 617 - -
Vimu3g03311 678 FunFam Cysteine-rich receptor-like protein kinase 10 304 421 - -
Vimu3g03311 678 Pfam Protein tyrosine and serine/threonine kinase 349 613 IPR001245 GO:0004672|GO:0006468
Vimu3g03311 678 Gene3D Transferase(Phosphotransferase) domain 1 422 625 - -
Vimu3g03311 678 FunFam Cysteine-rich receptor-like protein kinase 10 147 251 - -
Vimu3g03311 678 SMART serkin_6 346 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03311 678 ProSiteProfiles Protein kinase domain profile. 346 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03311 678 Gene3D - 148 251 IPR038408 -
Vimu3g03311 678 Gene3D - 32 138 IPR038408 -
Vimu3g03311 678 FunFam Cysteine-rich receptor-like protein kinase 28 422 624 - -
Vimu3g03311 678 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 10 675 - -
Vimu3g03311 678 SUPERFAMILY Protein kinase-like (PK-like) 331 616 IPR011009 -
Vimu3g03311 678 Gene3D Phosphorylase Kinase; domain 1 311 421 - -
Vimu3g03311 678 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Vimu3g03311 678 ProSiteProfiles Gnk2-homologous domain profile. 34 139 IPR002902 -
Vimu3g03311 678 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 30 139 - -
Vimu3g03311 678 ProSiteProfiles Gnk2-homologous domain profile. 145 252 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03311 Vimu-Chr3 46607756 46611103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03311 7 631 Receptor kinase-like Gene Family AT4G21410 47.951 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu3g03311 PK_Tyr_Ser-Thr 2.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03311 - - var:108324787 1239.94