Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03307 ATGGCTCAGCTTTGGCCAAGGCTACTTTTCTTTCTCTTTTGTCTTCTGATAACAAATTCTATATCTCAAGTTACAGCAGCCAACACTACTCAAAACTTCCATTACTTCTGTGATCATGATAACGATAGAGGAGACTACACCGCCAACAGCACCTACCACACCAACCTCAACACCCTTTTGTCCACTCTCATTTCCAATACAGAAATCCATTACGGTTTCTACAATTTCACAAATGGCGAAAACACTGATAAAGTGTACGCCATTGGGCTGTGTAGAGGAGATGTTCAGCCAGAGAACTGCCGCACATGCCTCAACGGTTCCAGGACCAATCTCACCGAACTTTGTCCAAACCGAAAGGAAGCAATTGGTTGGTACGAGGATGAGCAGTGTATGTTGCGCTACTCAGACCGCAATATATTCGGCCTTATGGAAATTGGACCTGCTTTTTATGCTAACAACGACAGAAATGCATCGGATTTGGATGAGTTCAATGAAGATGTCAACACCTTGCTACGTAACCTAAGCCGCATAGCTGCATCAGGTGACTCTCGTGTTAAGTCTCGTGTTAAGTATGCTGCAGATGATAAATTATCAGGTTCTAAGGTCATATATGGTCTAGTTCAGTGCACACCGGACTTGGAAGAGTCAGAGTGCGCTAATTGCTTGTACCAGTCCATTGAACGTATCCCAATAGATTGTTGTAAAGACAAGATAGGTGGCAGGGTTGTTAGACCAAGTTGTAATATGAGGTTCGAAACCTCCTTTAAGTTCTATGGAGATCCAGCATTTGTACCACCAGCTCCTACGGCTCTACAAGAAAAACTATATGATGATGATGATAATGATGGAATTGACGCTTCTGAGTCATTGCAAATCAGATTTAACATCATACGAGATGCTACAAATGACTTTTCTAATTCTAATAAACTCGGACAGGGTGGATTTGGGGCTGTTTACAGGGGTGCGCTACCCAATGGACAAGAGGTTGCCGTCAAAAGGTTGTCAGCTACTTCTAGACAAGGCGATGCCGAATTCAAGAATGAGGTACTGCTCGAGGTATTCTCTACCTCCATCAAGATTCTCGATTGCGCATTATCCATCGTGACCTCAAAGCTGATAGCAGATTTTGGCGTGGCAAGGTTATTTGCTGTGGACCAAACTCATGAAGATACACAGAGAGTTATTGGGACATTTGGATATATGGCACCTGAGTATGCAGTGTATGGAAAAATTTCAGAGAAGTCAGATGTTTTTAGCTTTGGTGTATTGATGCTTGAGATTGTAAGTGGTAAGAAAATCACTAGCATTCAACAAGGAGAGGAAACGGGATATCTATGCCATATTGCATGGCGAAGATGGAGTGAAGGAAGAGCAAGAGATATTGTAGATCCTACACTAAACAATGACAATGCAGCTGCGAGACCCACCATGGCTTCCGTTGTAGCCATGCTGAATAGCCATTCTTTCCGTCTGCAAGTACCTACGGCACCTGCATATGGGAATGCTCTGTCTGGAATCTTTGCAGGCATGGAAAAGATATTTGTTTATTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATATATATATATTATTAA 1626 0.4102 MAQLWPRLLFFLFCLLITNSISQVTAANTTQNFHYFCDHDNDRGDYTANSTYHTNLNTLLSTLISNTEIHYGFYNFTNGENTDKVYAIGLCRGDVQPENCRTCLNGSRTNLTELCPNRKEAIGWYEDEQCMLRYSDRNIFGLMEIGPAFYANNDRNASDLDEFNEDVNTLLRNLSRIAASGDSRVKSRVKYAADDKLSGSKVIYGLVQCTPDLEESECANCLYQSIERIPIDCCKDKIGGRVVRPSCNMRFETSFKFYGDPAFVPPAPTALQEKLYDDDDNDGIDASESLQIRFNIIRDATNDFSNSNKLGQGGFGAVYRGALPNGQEVAVKRLSATSRQGDAEFKNEVLLEVFSTSIKILDCALSIVTSKLIADFGVARLFAVDQTHEDTQRVIGTFGYMAPEYAVYGKISEKSDVFSFGVLMLEIVSGKKITSIQQGEETGYLCHIAWRRWSEGRARDIVDPTLNNDNAAARPTMASVVAMLNSHSFRLQVPTAPAYGNALSGIFAGMEKIFVYFIIIIIIIIIIIIIIIIIIIIYIYY 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03307 541 Gene3D Transferase(Phosphotransferase) domain 1 355 493 - -
Vimu3g03307 541 Pfam Salt stress response/antifungal 155 253 IPR002902 -
Vimu3g03307 541 Pfam Salt stress response/antifungal 37 136 IPR002902 -
Vimu3g03307 541 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Vimu3g03307 541 FunFam Cysteine-rich receptor-like protein kinase 10 147 255 - -
Vimu3g03307 541 Pfam Protein tyrosine and serine/threonine kinase 373 432 IPR001245 GO:0004672|GO:0006468
Vimu3g03307 541 ProSiteProfiles Gnk2-homologous domain profile. 145 256 IPR002902 -
Vimu3g03307 541 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 30 139 - -
Vimu3g03307 541 ProSiteProfiles Protein kinase domain profile. 134 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03307 541 ProSiteProfiles Gnk2-homologous domain profile. 34 139 IPR002902 -
Vimu3g03307 541 SUPERFAMILY Protein kinase-like (PK-like) 294 496 IPR011009 -
Vimu3g03307 541 Gene3D Phosphorylase Kinase; domain 1 272 354 - -
Vimu3g03307 541 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 373 500 - -
Vimu3g03307 541 Gene3D - 32 138 IPR038408 -
Vimu3g03307 541 Gene3D - 148 255 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03307 Vimu-Chr3 46571815 46578584 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03307 29 499 Receptor kinase-like Gene Family AT4G23280 35.614 6.50e-94 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu3g03307 PK_Tyr_Ser-Thr 1.4e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03307 - - vra:106770677 639.032