Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03306 ATGGCTGCAATTTTCTGTTTGCTTGGTCTCTGGGTCACCATAATCGTATCGCATGCAAGCGCTCAGACATCCTGTGATAACAACAAAGGCAACTACACAGTCAACAGCACTTATTACAACAACCTCAACACCCTCCTATCCAGTTTCTCTACCCACGCCCAAGTGAACTACGGTTTCTACAATTTCTCACATGGCCAAGGCCTAGACAAAGCATACGCCATTGGGATCTGCAGAGGGGACCTTACACCGGAAGAATGCCTCAAATGCCTCAACGAAAACGGAGCGGCTCTCACAAAAAACTGTCCAAACCAGAAAGAGGCAATTGTGTGGGATGGTGAATGCTCCTTGCGCTATTCTAACCGCTCCATATTTGGCCTCATGGATAATCAACCTACGGTGCTACTCTATTACACGTTGGAGGTAAGGGGTTCGATTGAGCAATTCAACGCATCGCTTGAAAGCTTGATGAGGAATCTAACACGCACAGCTGCGTCTGGTGACTCTCGTCGTAAGTATGCTACAGGCAGTGCACCTGCTCCAGATTTTCAAACCATATACGGTTACACGCAGTGCTCGCCTGATTTGTCTTCCGAAGATTGCTCAAAGTGTTTGGATGAAGCTATTTCAAAAATCCCAGATTGCTGTAAGGGCAAGGCTGGAGGCAATGTTTTGAAGCCCAGTTGTAGAATTAGATTTGACCCTTATATCTTCTATGGACCTACACTCAAGTTAGACCCAGATGCACCACCACCACCACCACCAACCACCCCACCACCCTCTCGCTTACCCAACAACACTTCTTTACATTCTCAAGGAAAGAGCAACACGTCACGAACCATCATCGCTGTAGCAGTGCCAGTTGCTGGTGTTGTTTTAGCGCTCAGTCTTTTTTGCATATATCTGATAGTTAGGAAGCCAAGAAAAGAAATTGAAATTGGAAAAGAAGAGGATAGTGACGATGAAGATGAAGTTACATTTACGGAGTCATTGCAATTCAACTTTGAAACCATCCGAGTTGCCACAAATGAATTTGCTGATTCTAATAAGCTTGGACAGGGCGGTTTTGGAGCTGTATACAAAGGTCAGCTTTCCAATGGACAAGGAATTGCTGTCAAAAGGTTGTCAAGTAATTCTGGGCAAGGAGATACGGAGTTCAAGAATGAAGTGCTTTTATTGGCCAAACTTCAACACCGAAATTTAGTGAGGCTGATTGGTTTCTGTTTGGAAGGAAGAGAAAGGCTGCTTATCTATGAATTTGTTCCTAATAAAAGTCTTGATTACTTCATATTTGGTAAGCTCGAACAACTGTGGATCAGACTCAAGCAAATACACACAGAGTTGTTGGAACCTAGTAATGGATATATGGCTCCTGAGTATGCAGTATATGGTCATTTTTCAGCAAAATCAGATGTTTTTAGTTATGGTGTAATGGTTCTTGAGATTGTAAGTGGGCGAAAAAGCATCGGTGCCCGTCATGGGGAGACAGTGGAGGATCTATTGAGCTTTACATGGCAAAACTGGAAGAATGGAACAATTACAAATATTGTAGACCCCACATTAATGAAGGGTTCTCGAAATGAAATGATAAGATGTATCCACATTGGGTTACTATGTGTTCAGGAAGATATGGCCATCAGACCAACCATGGCTTCTGTAGTACTCATGCTTAATAGTTATTCTATCACTCTCCCAGTACCTTCAGAACCTGCATTTGTTGTGAACAGTAGCACAAGAAGCTTTCCAAACATGTTGTCGGGAGAGCATAATTCAGAGAAAACAGGATCGACTGAATCCACAAATAATCCAGCTCAATCTTCGGTAAATGAGGTTTCAATTACTGAGTTATACCCTCGCTAG 1857 0.4313 MAAIFCLLGLWVTIIVSHASAQTSCDNNKGNYTVNSTYYNNLNTLLSSFSTHAQVNYGFYNFSHGQGLDKAYAIGICRGDLTPEECLKCLNENGAALTKNCPNQKEAIVWDGECSLRYSNRSIFGLMDNQPTVLLYYTLEVRGSIEQFNASLESLMRNLTRTAASGDSRRKYATGSAPAPDFQTIYGYTQCSPDLSSEDCSKCLDEAISKIPDCCKGKAGGNVLKPSCRIRFDPYIFYGPTLKLDPDAPPPPPPTTPPPSRLPNNTSLHSQGKSNTSRTIIAVAVPVAGVVLALSLFCIYLIVRKPRKEIEIGKEEDSDDEDEVTFTESLQFNFETIRVATNEFADSNKLGQGGFGAVYKGQLSNGQGIAVKRLSSNSGQGDTEFKNEVLLLAKLQHRNLVRLIGFCLEGRERLLIYEFVPNKSLDYFIFGKLEQLWIRLKQIHTELLEPSNGYMAPEYAVYGHFSAKSDVFSYGVMVLEIVSGRKSIGARHGETVEDLLSFTWQNWKNGTITNIVDPTLMKGSRNEMIRCIHIGLLCVQEDMAIRPTMASVVLMLNSYSITLPVPSEPAFVVNSSTRSFPNMLSGEHNSEKTGSTESTNNPAQSSVNEVSITELYPR 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03306 618 ProSiteProfiles Gnk2-homologous domain profile. 20 123 IPR002902 -
Vimu3g03306 618 MobiDBLite consensus disorder prediction 243 273 - -
Vimu3g03306 618 Gene3D Phosphorylase Kinase; domain 1 308 419 - -
Vimu3g03306 618 Gene3D Transferase(Phosphotransferase) domain 1 440 563 - -
Vimu3g03306 618 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 22 432 - -
Vimu3g03306 618 Pfam Protein tyrosine and serine/threonine kinase 453 554 IPR001245 GO:0004672|GO:0006468
Vimu3g03306 618 Pfam Protein tyrosine and serine/threonine kinase 348 431 IPR001245 GO:0004672|GO:0006468
Vimu3g03306 618 FunFam Cysteine-rich receptor-like protein kinase 10 132 237 - -
Vimu3g03306 618 ProSiteProfiles Protein kinase domain profile. 344 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03306 618 SUPERFAMILY Protein kinase-like (PK-like) 329 585 IPR011009 -
Vimu3g03306 618 ProSiteProfiles Gnk2-homologous domain profile. 129 237 IPR002902 -
Vimu3g03306 618 ProSitePatterns Protein kinases ATP-binding region signature. 350 372 IPR017441 GO:0005524
Vimu3g03306 618 MobiDBLite consensus disorder prediction 244 261 - -
Vimu3g03306 618 MobiDBLite consensus disorder prediction 582 612 - -
Vimu3g03306 618 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 18 123 - -
Vimu3g03306 618 Pfam Salt stress response/antifungal 146 233 IPR002902 -
Vimu3g03306 618 Pfam Salt stress response/antifungal 25 120 IPR002902 -
Vimu3g03306 618 Gene3D - 137 237 IPR038408 -
Vimu3g03306 618 Gene3D - 19 122 IPR038408 -
Vimu3g03306 618 MobiDBLite consensus disorder prediction 582 618 - -
Vimu3g03306 618 FunFam Cysteine-rich receptor-like protein kinase 10 305 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03306 Vimu-Chr3 46564221 46567651 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03306 28 618 Receptor kinase-like Gene Family AT4G21410 42.273 5.36e-167 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu3g03306 PK_Tyr_Ser-Thr 4.5e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03306 - - gmx:113000777 786.949