Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03303 ATGATACCTATGGCTGCCATTTTTTGCATGCTTGTTTTGCTTCTCTCTTGTCTAATATCTGGAACCAGCGCCCAGTATAACACCCAGTACTGTGATAACAGCAAAGGGAACTATACAATCAATAGCACCTATCACAACAATCTCAACACCCTTCTATCCACGCTGTCTTCCCACACAGAAATTAACTATGGTTTCTACAACTTCTCATATGGTCAAAACAGTGACAAAGTAAACGCCATTGGGCTCTGCAGAGGAGATGTTAAGCCGGACGAGTGCCGCAGGTGCCTCAACGATTCTGCAGTCACAATCACACAGCTTTGTCCAAACCAGAAAGAGGCCCTTCTGTGGTTGAAAACTGGCAAATGCCTATTGCGTTATTCTAATCGCACAATATTCGGGGTCATGCAATATTCTCCCGGCTTCTACTTGAAGAACGTAAACAATGTAACGGACGCGGATAACTTTATCCAAGCGCTCTCCAACTTAATGAGGAATCTCACAGTTGTGGCTGCATCAGGTGACTCTCGTCGTAAGTATGCTGCGGATAGGGCTATTGCATCAAATTTTAAAACCGTTTACGTATATGGTCTTGTGCAGTGCACCCCTGATTTGTCTGAGATAGCCTGCAGTTCATGCTTGGAAAAGGTTATCTCAGAAATCCCATCGTGCTGTGTGAACGCGATAGGTGGTAGAATTCTTAGACCAAGTTGTAATATTAGATTCGAAAGCGATTTGTTCTACGATCAAACGCCTAAACTAGACTCTGACGTAACCGCACCATCTCCATCACCTCCTTCTTCCCTGAATAACACTTCCCCCGAAGGAAGCAACAACACGGTAATAGTTGTCATTGCCGTTGTTCTTTCTACTGTTGTTGTTGCTGTCTCATTTAAGGAGGAGGAAGGCAAGAAAACGTTTAGCAGGCAAGTTCCAATTAATCAAGATGATGATGACATTGAAATTGCTCAGTCATTGCAATTCGACTTCGACACAATACGAGTTGCTACAGAAGACTTCTCTGATTCTAATAAACTTGGAGAAGGTGGATTTGGAGCCGTTTACAAGGGTAGGCTCCCCAATGAACAGATGATTGCAGTCAAAAGGTTGTCAAGTGGATCCAGCCAAGGAGACACAGAGTTTAAGAATGAAGTGCTTTTAGTGGCCAAGCTTCAGCACAGAAATTTAGTTAGACTACTTGGTTTCTGCTTGGAAGGAAGAGAAAGGCTACTCGTCTATGAGTTTGTTCCTAACAAAAGCCTTGATTATTTCATATTTGATCCAGCTAAGAAAGCACTATTGGATTGGGCAATGCGATACAAAATCATAAAAGGTATCAGCCGAGGGCTTCTCTACCTTCACGAAGATTCTCTTCTGCGTATTATACATCGTGATCTCAAAGCAAGCAATATTCTCTTAGACGAAGAGATGAATCCTAAGATAGCAGATTTTGGAATGGCAAGACTGGTTTTACTGGATCAAACTCACGCAAATACAGATAGAGTTGTGGGAACCTATGGATACATGGCACCGGAATACATAACGCAAGGACAATTTTCGGTGAAGTCAGATATCTTTAGTTTTGGTGTACTGCTTCTTGAGATCGTAAGTGGCCAGAAAAACAGTAGTTTTCGTCATGGGGAGAATGTTGAAGATCTACTGAGCTTCGCATGGAGAAAGTGGAGGGAGGGAACAGCTGTAAACATTGTAGATCCATCATTGAACAACAATTCAATAATAAATGAAGTGATGAGATGCATTCATATTGGTTTGCTCTGTGTTCAAGAGAATTTAACTGACAGGCCAACCATGGCGACCGTTATGCTCATGCTGAGTAGCTATTCTCTCAGTCTTCCTATCCCTTCTGAACCTGCATTTTATGCCCACAGTACAACTAGAAGCCTTCCAGCCACGCTTTCATGGGGGCACAGTTCAAGGGCAACAACAAACGAATCAACAAACAAATCTGCTCAAGAGTCAGAAAATGAGAATTCAATTACTGAACTGTACCCACGCTAG 2016 0.4261 MIPMAAIFCMLVLLLSCLISGTSAQYNTQYCDNSKGNYTINSTYHNNLNTLLSTLSSHTEINYGFYNFSYGQNSDKVNAIGLCRGDVKPDECRRCLNDSAVTITQLCPNQKEALLWLKTGKCLLRYSNRTIFGVMQYSPGFYLKNVNNVTDADNFIQALSNLMRNLTVVAASGDSRRKYAADRAIASNFKTVYVYGLVQCTPDLSEIACSSCLEKVISEIPSCCVNAIGGRILRPSCNIRFESDLFYDQTPKLDSDVTAPSPSPPSSLNNTSPEGSNNTVIVVIAVVLSTVVVAVSFKEEEGKKTFSRQVPINQDDDDIEIAQSLQFDFDTIRVATEDFSDSNKLGEGGFGAVYKGRLPNEQMIAVKRLSSGSSQGDTEFKNEVLLVAKLQHRNLVRLLGFCLEGRERLLVYEFVPNKSLDYFIFDPAKKALLDWAMRYKIIKGISRGLLYLHEDSLLRIIHRDLKASNILLDEEMNPKIADFGMARLVLLDQTHANTDRVVGTYGYMAPEYITQGQFSVKSDIFSFGVLLLEIVSGQKNSSFRHGENVEDLLSFAWRKWREGTAVNIVDPSLNNNSIINEVMRCIHIGLLCVQENLTDRPTMATVMLMLSSYSLSLPIPSEPAFYAHSTTRSLPATLSWGHSSRATTNESTNKSAQESENENSITELYPR 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03303 671 MobiDBLite consensus disorder prediction 254 273 - -
Vimu3g03303 671 ProSiteProfiles Protein kinase domain profile. 339 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03303 671 SMART serkin_6 339 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03303 671 FunFam Cysteine-rich receptor-like protein kinase 10 139 246 - -
Vimu3g03303 671 Pfam Protein kinase domain 340 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03303 671 MobiDBLite consensus disorder prediction 253 273 - -
Vimu3g03303 671 Gene3D Transferase(Phosphotransferase) domain 1 415 617 - -
Vimu3g03303 671 FunFam cysteine-rich receptor-like protein kinase 10 415 617 - -
Vimu3g03303 671 FunFam Cysteine-rich receptor-like protein kinase 10 301 414 - -
Vimu3g03303 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Vimu3g03303 671 MobiDBLite consensus disorder prediction 638 671 - -
Vimu3g03303 671 Gene3D - 141 246 IPR038408 -
Vimu3g03303 671 Gene3D - 23 130 IPR038408 -
Vimu3g03303 671 ProSiteProfiles Gnk2-homologous domain profile. 137 246 IPR002902 -
Vimu3g03303 671 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 24 131 - -
Vimu3g03303 671 Gene3D Phosphorylase Kinase; domain 1 300 414 - -
Vimu3g03303 671 SUPERFAMILY Protein kinase-like (PK-like) 325 640 IPR011009 -
Vimu3g03303 671 CDD STKc_IRAK 345 606 - -
Vimu3g03303 671 ProSiteProfiles Gnk2-homologous domain profile. 26 131 IPR002902 -
Vimu3g03303 671 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Vimu3g03303 671 Pfam Salt stress response/antifungal 31 128 IPR002902 -
Vimu3g03303 671 Pfam Salt stress response/antifungal 147 243 IPR002902 -
Vimu3g03303 671 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 22 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03303 Vimu-Chr3 46548945 46551756 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03303 29 671 Receptor kinase-like Gene Family AT4G38830 48.402 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu3g03303 Pkinase 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03303 - - var:108324785 1040.02