Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03302 ATGATAATACGCAAAGCTTCAGTTAAGGTTGTTGGTTGTTCTGATTATCTGATGGGTGCCGTTTCTTGCATGCTTCTTTTCTTTCTCTGTTGTCTAATACCTGAAGCCAGTGGCCAGGATGTCTTACAAACCTGTGATAACAACAACGGGAACTACACAGCTAATAGCACCTATAGCACCAATCTCAACACCCTTTTATCCACTCTTTCTTCCAACACAGAAATCAATTATGGTTTCTACAACTTCTCCCATGGTCAAAACGCAGACAGAGTCAACGCCATTGGGCTGTGCAGGGGAGATGTGGAGCCAAACCAATGCCGCAGTTGCCTCAAAGATGCCGGAGGCAATATCACACAGCTTTGTCCAAACCAGAAACAGGCTACTATATATTATGAAAACTGCATGTTGCGCTACTCAAACGGCTCAATATTTGGGATCTTGGATAGTAACCCCGACTTTTATATGTGGAACCAAAATAATGCAACAGAAGCGGCTGAGTTCAATCAAGTGCTTCAAAACTTATTAAGGGAACTCAAAGATAAAGCAGCATCCGGTGACTCCCGTCGTAAGTATGCTACGGATAATGACACAACTACCAATTTTCAAGCCATATATGGTCTTGTGCAATGCACCCCTGATTTGACTCAGACACAGTGCAACGATTGCTTGGATGTGGCTATCTCACAAATCCCAATTTGCTGCAACGACAAGAGAGGTGGTAGAGTTCTTGGACCCAGCTGCAATATTAGATATGAGGATTATCGCTTCTATGGACAGACAACGATAATAGACCCAGAGACACCACCACCCACAGTTAACAATTCCACGGAAGAAAGTAGCAACACAGCAACAATTGTCATTGCCGTAGTTGTGCCTACTGTTGTTGTTGTTTTGCTCACCTGTCTCTTCATTTGTTTAAGGAGGAGAAAGGCAAGGAAAAATCTTGAAGTTAAAAAAGAAGAAAGAGAAGAAGAAGATGAAGTTGAGGATGAAATTAAAATTGCCGAATCATTGCAATTCAACTTTGAGACAATACGAGTTGCTACCGAGGACTTCTCTGATTCTAATAAACTTGGACAAGGCGGATTTGGAGCTGTTTACCGGGGTAGACTCTCCAATGGACAGATAATTGCAGTGAAAAGGTTGTCAAGAGATTCTGGGCAAGGAGATACGGAATTTAAGAATGAAGTGCTTTTAGTGGTGAAGCTTCAGCACCGAAATTTAGTTAGGCTACTCGGTTTCTGCTTGGAAGGAAGAGAAAGACTACTTGTCTATGAATTTGTTCCCAATAAAAGCCTTGATTATTTCATATTTGATCCAGCCATGAAAGCACGATTGGATTGGGAAAAGCGCTACAAAATCATTAGAGGTATTGCTCGAGGTCTTCTCTACCTTCACGAAGATTCTCAACTACGAATTATCCATCGAGATCTCAAAGCAAGCAACATTCTCTTAGATGAAGAGATGAATCCTAAGATAGCAGATTTTGGCATGGCAAGACTGACCTTTCCATATTGGTCTGTAGTGGATATATGGCACCAGAGTATGCAATGCATGGACAGTTTTCGTTTTGGTGTACTGATTCTTGAGATCGTAAGCGGCCAGAAAAACAGTGGGATCAATAATGGGGAGAACATGGAGGATCTGCTAAGCTTCGCTTGGAGAAACTGGAAGGAGGGGAAGGCATTAAATATTATAGATCCATCACTCAACAACAATTCAAGGAATGAAATGCTTAGATGCATCCATATTGGTTTACTCTGTGTTCAAGAAAATTTAATTGACAGACCGACCATGGCTACCATTATACTGATGCTTAACAGCTATTCTCTGAGTCTCCCTATTCCTGCAGAACCTGCATTTTATATGAACAGTAGAACTAGAAGCTTTCCAGAGATGCAGTCATGGGAGTACAATTCAAGGGAAAGAGAATCAAGTGACCCGATACTTAAATCAGCTCAAGAATCAGAAAATGAAGCTTCAATTACTGAGCTATACCCTCGCTAG 2007 0.415 MIIRKASVKVVGCSDYLMGAVSCMLLFFLCCLIPEASGQDVLQTCDNNNGNYTANSTYSTNLNTLLSTLSSNTEINYGFYNFSHGQNADRVNAIGLCRGDVEPNQCRSCLKDAGGNITQLCPNQKQATIYYENCMLRYSNGSIFGILDSNPDFYMWNQNNATEAAEFNQVLQNLLRELKDKAASGDSRRKYATDNDTTTNFQAIYGLVQCTPDLTQTQCNDCLDVAISQIPICCNDKRGGRVLGPSCNIRYEDYRFYGQTTIIDPETPPPTVNNSTEESSNTATIVIAVVVPTVVVVLLTCLFICLRRRKARKNLEVKKEEREEEDEVEDEIKIAESLQFNFETIRVATEDFSDSNKLGQGGFGAVYRGRLSNGQIIAVKRLSRDSGQGDTEFKNEVLLVVKLQHRNLVRLLGFCLEGRERLLVYEFVPNKSLDYFIFDPAMKARLDWEKRYKIIRGIARGLLYLHEDSQLRIIHRDLKASNILLDEEMNPKIADFGMARLTFPYWSVVDIWHQSMQCMDSFRFGVLILEIVSGQKNSGINNGENMEDLLSFAWRNWKEGKALNIIDPSLNNNSRNEMLRCIHIGLLCVQENLIDRPTMATIILMLNSYSLSLPIPAEPAFYMNSRTRSFPEMQSWEYNSRERESSDPILKSAQESENEASITELYPR 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03302 668 Gene3D Phosphorylase Kinase; domain 1 311 427 - -
Vimu3g03302 668 FunFam Os07g0541700 protein 428 504 - -
Vimu3g03302 668 FunFam Cysteine-rich receptor-like protein kinase 17 319 427 - -
Vimu3g03302 668 FunFam Cysteine-rich receptor-like protein kinase 10 151 256 - -
Vimu3g03302 668 Pfam Salt stress response/antifungal 159 254 IPR002902 -
Vimu3g03302 668 Pfam Salt stress response/antifungal 45 140 IPR002902 -
Vimu3g03302 668 ProSiteProfiles Gnk2-homologous domain profile. 40 143 IPR002902 -
Vimu3g03302 668 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Vimu3g03302 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Vimu3g03302 668 Pfam Protein kinase domain 353 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03302 668 SUPERFAMILY Protein kinase-like (PK-like) 338 638 IPR011009 -
Vimu3g03302 668 ProSiteProfiles Protein kinase domain profile. 352 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03302 668 SMART serkin_6 352 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03302 668 ProSiteProfiles Gnk2-homologous domain profile. 149 256 IPR002902 -
Vimu3g03302 668 Gene3D - 151 256 IPR038408 -
Vimu3g03302 668 Gene3D - 39 142 IPR038408 -
Vimu3g03302 668 MobiDBLite consensus disorder prediction 637 668 - -
Vimu3g03302 668 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 39 143 - -
Vimu3g03302 668 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 34 501 - -
Vimu3g03302 668 Coils Coil 308 338 - -
Vimu3g03302 668 Gene3D Transferase(Phosphotransferase) domain 1 428 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03302 Vimu-Chr3 46544514 46547408 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03302 25 668 Receptor kinase-like Gene Family AT4G21410 45.349 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu3g03302 Pkinase 4.6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03302 - - vra:106771832 1125.15