Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03299 ATGGTCTCTGAAACAGTGCTCTTTTTCCTGTCCCTTCTTGGTATTCTTATATCTGAAGCTATTGCCGAGCCAGACTACCAATACAATTACACAATCTGCTACCAAAGTGGAGACTATGCTCCTAATACCACCTACCACACTAACCTCAACACTGCTCTTTCAAGGCTCACTTCTAACACCCAAATTGATTATGGCTCCTACAATTCCTCCTATGGCCAAGACTCTGATAGAGTCTACGCAACTGGCCTTTGTAGAGGAGATGTTAGCCCACATACTTGCCTTACTTGCCTCAACGATTCTGCCTCCCTTCTCTTAAAGCACTGTCCAAATCAGAAGGAAGCTGTGGTAATATTTGATTTATGCATGTTACACTATGCAGATCACTCGATATCTGGTTACCAAGACTCTAGTTTGCGCTTTTATTTTTGGTGGGAAACTAATGTAACAGATTGGAATCAGTACAGTTATGTGCTGAACAAGTTGCTGTTAAAACTAAGAGAGAAAGCCGCATCAGCTGACTCCTTTCACGGAAGTAAATTTGCTGCAGGAAATGCAACTGGTCCGAGTTCTGAAACTGTGTATGCCGTTGTTCAGTGCTCACCTGAATTGACTGTGGCAGAGTGCAACGACTGCTTAGGTGGTGCCTTTTCAGAAATATCCAAATATTGTAATAACAGAATAGGTTGCGGAATTGTTAAATTGAGCTGTAATTTCAGATATATGAACTCCAGCTTCTATGAGCCTACTGTGGATACACTAGCACTACAACTGCCACCACAAGGATTTGCATCTCCTCCTTCATCATCACCTACACCATCCACCACTTCAAACTCTTCAGAGATTTCTTATCATGGAAAGAGCAACAGATCACAACCTGTCAACGCCAAGTACGTTGTGCCAGTTCTTGTCTTTACTGGGATGCTGATTTTTATTTGCATCTATTTAAGAGTCAGGAAGCCAAGAAAATATTTTGGGAGTAAGGTAGATGATGAAATTATACAATTAGAGTCGTCAAGATTTGACCTTGACGCCATCAGAGTCGCTACAAACAACTTCTCTGATGAAAACAAGCTAGGACAAGGAGGATTTGGACCTGTTTACAAGGGCACGCTCTTCAATGAACAAGTAGTAGCAGCCAAAAGGTTATGTAGCAACTCTGGCCAAGGAGATATTGAGTTCAAGAATGAAGTACTATTAATGTCAAGGCTTCAGCACCGAAATTTAGTTAAGCTCCTTGGTTTCTGTTTTGAAAGAGAAGAACGACTCCTTGTCTACGAGTTTCTTCCCAACAAAAGTCTTGACAACCACATATTTGATCACATCGGGAGAGCACGTTTGGATTGGAAAAAACGCTACAGTATAATTAAAGGCATTGCTTATGGCCTTCTTTATCTTCATGAGGATTCTCAGCAGAGGATTATTCACCGAGATCTCAAATTGAGCAATATTCTTTTAGATGATGACATGAATCCTAAGATTTCAGATTTTGGTTTTGCAAGGCTTTTTAATGTGGATCAAACTCAGTTTAATGCAAGTAAAATTGCAGGAACCTTGCGAGGAGAATGGACTATTTGTCCAAAGAACAGTGGATACATGGCACCTGAGTATGCAAGACACGGAAAACTCTCGATGAAGTTAGATGTCTTCAGTTTTGGTGTAATAATGCTAGAGATTGTAAGTGGCCAAAAGAATGGTGGATTTCGTAATGGAGAGAATGTGGAGCATCTATTAAGCTTGGCTTGGAAAAACTGGACGAAAGGGAGAACAGCAAATATTATAGATCCGACCTTACATAATGGTTTGAGAGATGAAATAGTGAGATGCATTCACATTGGACTACTTTGTGTTCAAGAAAAGGCTGCTGATAGACCAACAATGGCATCAGTGGTGCTTATGCTTGATAGCCACTCTTTTGCTCTACCAGCTCCATTGCAACCTGCTTATTTTATGAAAAATAGTCGTTTAACAGTTACCCAGTTTTCGAAGTGTAGTTCTACGGAAACAGGGTCAAGTGAACAGAAAAGTTACTATGCTGATGGATCAGCTAATGAGGCTTCAATTAGTAGTCTATATCCTCGTTAA 2082 0.4049 MVSETVLFFLSLLGILISEAIAEPDYQYNYTICYQSGDYAPNTTYHTNLNTALSRLTSNTQIDYGSYNSSYGQDSDRVYATGLCRGDVSPHTCLTCLNDSASLLLKHCPNQKEAVVIFDLCMLHYADHSISGYQDSSLRFYFWWETNVTDWNQYSYVLNKLLLKLREKAASADSFHGSKFAAGNATGPSSETVYAVVQCSPELTVAECNDCLGGAFSEISKYCNNRIGCGIVKLSCNFRYMNSSFYEPTVDTLALQLPPQGFASPPSSSPTPSTTSNSSEISYHGKSNRSQPVNAKYVVPVLVFTGMLIFICIYLRVRKPRKYFGSKVDDEIIQLESSRFDLDAIRVATNNFSDENKLGQGGFGPVYKGTLFNEQVVAAKRLCSNSGQGDIEFKNEVLLMSRLQHRNLVKLLGFCFEREERLLVYEFLPNKSLDNHIFDHIGRARLDWKKRYSIIKGIAYGLLYLHEDSQQRIIHRDLKLSNILLDDDMNPKISDFGFARLFNVDQTQFNASKIAGTLRGEWTICPKNSGYMAPEYARHGKLSMKLDVFSFGVIMLEIVSGQKNGGFRNGENVEHLLSLAWKNWTKGRTANIIDPTLHNGLRDEIVRCIHIGLLCVQEKAADRPTMASVVLMLDSHSFALPAPLQPAYFMKNSRLTVTQFSKCSSTETGSSEQKSYYADGSANEASISSLYPR 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03299 693 Gene3D Transferase(Phosphotransferase) domain 1 428 639 - -
Vimu3g03299 693 ProSiteProfiles Protein kinase domain profile. 352 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03299 693 Pfam Protein tyrosine and serine/threonine kinase 355 630 IPR001245 GO:0004672|GO:0006468
Vimu3g03299 693 ProSiteProfiles Gnk2-homologous domain profile. 27 130 IPR002902 -
Vimu3g03299 693 FunFam cysteine-rich receptor-like protein kinase 10 428 640 - -
Vimu3g03299 693 SMART serkin_6 352 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03299 693 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Vimu3g03299 693 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 26 130 - -
Vimu3g03299 693 MobiDBLite consensus disorder prediction 261 288 - -
Vimu3g03299 693 Gene3D - 26 129 IPR038408 -
Vimu3g03299 693 Gene3D - 135 245 IPR038408 -
Vimu3g03299 693 ProSiteProfiles Gnk2-homologous domain profile. 136 245 IPR002902 -
Vimu3g03299 693 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 35 690 - -
Vimu3g03299 693 Pfam Salt stress response/antifungal 148 242 IPR002902 -
Vimu3g03299 693 Pfam Salt stress response/antifungal 33 127 IPR002902 -
Vimu3g03299 693 Gene3D Phosphorylase Kinase; domain 1 318 427 - -
Vimu3g03299 693 SUPERFAMILY Protein kinase-like (PK-like) 333 633 IPR011009 -
Vimu3g03299 693 CDD STKc_IRAK 358 634 - -
Vimu3g03299 693 MobiDBLite consensus disorder prediction 267 288 - -
Vimu3g03299 693 FunFam Cysteine-rich receptor-like protein kinase 10 316 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03299 Vimu-Chr3 46532475 46535584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03299 5 693 Receptor kinase-like Gene Family AT4G21410 42.454 2.48e-178 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu3g03299 PK_Tyr_Ser-Thr 5.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03299 - - gmx:100790532 1004.97