Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03285 ATGCTTTTTCATGCATCTGAATCAGCAGCCATTTACAGTGCCCACTTCTGCACCAATGAAACCTTTTACTCATCCGACACCAAATTTCAATCTAACTTGAATACCCTCCTCTCTTCTCTTGTTTCAAACTCCTCCCTTCCCTCCAACAGCGGTTTCCTCCGAACCTCCGTCGACGACATCGACGGCCGTTTTCTCTGCCGCGGCGACGTCAACGCGACCGTCTGCCATGGCTGCGTCGCCGCAGCAGCAGCCAACATAACTCGCCTCTGTCCCAACGATACCGAGTCCTACATCTGGTACGACGAGTGTACGCTAATCTACTCCAACAGCACCTTCAACAATGATGACATAGTTCCAGGGATTCCCCTCAACGACGAAGGAAGCACCGTTAACTCAAATCAGGACCACTTCAACCAATTACTGTTGAACTTGTTAAACAGTTTGGAGGGAAAAGCTTTGGAGAGTTCCATGGGAGAGAAGAAGTTCGCCGCAGGTGCGGTGAGTGTGACGAGCGCGCAAACGCTCCAGACTCAACGAGTGGTGGTTGTGAGGCGTGCTTTCGAAGCGCAATTGCAGCTATTCCATCGTGTTGCAACGGAAGCGGAGGAGCAAGGCTTCTGCTTCCCATATGTAGCATCAGATACCAACTGCATCCCTTTCTGTACAATTCCACCATGCTCATTCCTTCTTCAGCAAAATTACATTGATGATTGTGACGATTGTTATCCCGATAGCTATTTTGGCGCTGTTCTTGTTCATAGGATGCTGCTGGTGGCGAAGAAGGCAAAGAGAAAAGCTCTGATAATTTATGTATTTCAAGGCTTGAACAGTGTGCCTAATTTTGCAACTACTACAACTTCGAGATATTTGACTGAGGAAGAGTCTTTGCATTTTGACTTGGCTACAATAGAAGCAGCCACAAATAGTTTCTCAGATGAGATGAAGATAGGAGAAGGTGGATTTGGAGCGGTTTATAAGGGTATCTTTCCTAATGGAGAAGAGATAGCTGTGAAGAGGCTATCAAGAACCTCCCTTCAAGGTGACAGAGAATTCAAGAACGAGGTTCTACTTATTGCTCAGCTTCAACACAAAAATTTAGTTAGACTGTTAGGCTTTTGTATGGAGAGAACGGAGAGGATACTGGTTTACGAGTTTATCCAAAATTCCAGCCTCGACCACTTTCTATTTGATCACGAAGACCATGCATTGTTAGACTGGGCAAGACGGTACAAAATTATAGTTGGGATTGTACGTGGAATTCAATATCTCCATGAAGATTCTCGGCTAAAAGTAATACACCGCGATCTCAAGGCATCTAATGTTTTACTAGATGCCGATATGAATCCAAAGATTTCCGACTTTGGAATGGCAAAGGTTTTCCATGGAGATCAAAGTCAAGAAAATACAAGAACAGGAAGGGTAGTTGGAACTTTTGGTTACATGTCTCCCGAATATGCCATGCATGGGAAATTCTCAGAGAAATCCGACGTGTTCAGTTTTGGAGTCTTGGTTTTGGAGATCCTTAGTGGCAAGAAGAACACAAGTTATTATCGATCACATGAGGATAATGATGACCTTTTGAGCTTTGCTTGGAAGAATTGGATAGATCGAACACCGTTCCAGATATTGGATCCAAAACTGAGAGGTTCTTATTCTAGAAATGAAGTTCAGAGATGCATTCATGTTGCATTATTATGCGTTCAAGAAAACCCAGTTGAGAGACCATCAATGGCGACAATAACGCTTGCATTGAACGCTTATTCAGTAACTCTAGGGTTGCCCAGACAGCCAGCATCTTTTGTGAGAGGAAGAGTAACAACAGAGAGATTAAGACACCAGCATGATTCTGATCAGTCCAATAGTTCTTCAATCCCTTATTCTGCTGCTGATTCATTAATCACTGAAGTATATCCTCGTTAA 1920 0.4391 MLFHASESAAIYSAHFCTNETFYSSDTKFQSNLNTLLSSLVSNSSLPSNSGFLRTSVDDIDGRFLCRGDVNATVCHGCVAAAAANITRLCPNDTESYIWYDECTLIYSNSTFNNDDIVPGIPLNDEGSTVNSNQDHFNQLLLNLLNSLEGKALESSMGEKKFAAGAVSVTSAQTLQTQRVVVVRRAFEAQLQLFHRVATEAEEQGFCFPYVASDTNCIPFCTIPPCSFLLQQNYIDDCDDCYPDSYFGAVLVHRMLLVAKKAKRKALIIYVFQGLNSVPNFATTTTSRYLTEEESLHFDLATIEAATNSFSDEMKIGEGGFGAVYKGIFPNGEEIAVKRLSRTSLQGDREFKNEVLLIAQLQHKNLVRLLGFCMERTERILVYEFIQNSSLDHFLFDHEDHALLDWARRYKIIVGIVRGIQYLHEDSRLKVIHRDLKASNVLLDADMNPKISDFGMAKVFHGDQSQENTRTGRVVGTFGYMSPEYAMHGKFSEKSDVFSFGVLVLEILSGKKNTSYYRSHEDNDDLLSFAWKNWIDRTPFQILDPKLRGSYSRNEVQRCIHVALLCVQENPVERPSMATITLALNAYSVTLGLPRQPASFVRGRVTTERLRHQHDSDQSNSSSIPYSAADSLITEVYPR 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03285 639 SUPERFAMILY Protein kinase-like (PK-like) 295 592 IPR011009 -
Vimu3g03285 639 Gene3D Transferase(Phosphotransferase) domain 1 386 591 - -
Vimu3g03285 639 Pfam Protein tyrosine and serine/threonine kinase 314 581 IPR001245 GO:0004672|GO:0006468
Vimu3g03285 639 Pfam Salt stress response/antifungal 17 109 IPR002902 -
Vimu3g03285 639 ProSiteProfiles Protein kinase domain profile. 310 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03285 639 Gene3D - 9 112 IPR038408 -
Vimu3g03285 639 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 19 627 - -
Vimu3g03285 639 FunFam cysteine-rich receptor-like protein kinase 10 386 591 - -
Vimu3g03285 639 ProSiteProfiles Gnk2-homologous domain profile. 11 112 IPR002902 -
Vimu3g03285 639 SMART serkin_6 310 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03285 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Vimu3g03285 639 Gene3D Phosphorylase Kinase; domain 1 276 385 - -
Vimu3g03285 639 CDD STKc_IRAK 316 580 - -
Vimu3g03285 639 FunFam Cysteine-rich receptor-like protein kinase 10 276 385 - -
Vimu3g03285 639 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03285 Vimu-Chr3 46467763 46471944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03285 4 639 Receptor kinase-like Gene Family AT4G23150 42.730 5.75e-161 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu3g03285 PK_Tyr_Ser-Thr 3.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03285 - - ccaj:109806163 746.503