Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03284 ATGTGCATCTTGAAATCCTCTTCAACCCACTTGGTTATAATTCTCTCCCTGTTTCTGTTCCTAAACTTTGCAAGTGAAGCTGCTCCTACATATGCCACACAGGCCTGCACAGATGAATCCTTTTACCTACCCAACACAACATTCCAAACCAACTTGAATCTCCTTCTATCATCCCTCGTCTCTAACGCCACCCTCCACGATGGTTACTACCTCACCAACATCTCCCTGGGAGCCCCTGGTGAGGTCAAGGGACTCTTCCTTTGCCGCGGTGACGTCACCCCCTCCGTCTGCCACGACTGTGTCGCCGCCGCTGCCGACAACATCACACGCCTCTGCACCAACACTACAGAGTCTGTAATATGGTATGACGAGTGTATGGTTCGCTACTCCAACCTTTCCTTCCTCAACAACATAGTACCAAGTGTCGGCATGAGTTCCCAACAGAGCGTTCCTGATTCCGATAGTACTAGCTTCAACAATTTTCTTGCATCCGCGCTGAATGGTGCGGTGCTGGATGCCGTGAATTCTCTTTCGGGTAGAATGTTTGCCACAAGAGAAGCGAATTTCACGAGCTCAATGAATCTGTACGCCCTGGCGCAGTGTAGGCCTGATTTATCCGCCTTCGATTGCAACATGTGCTTAAAAAGCGCCACGAGTAACCTCGGTGAAGGAAAACGAGGTGCACGCAGCCTGCTTCCTGGTTGTAATGTCAGATATGAATTGTACCCTTTCTACAATGTTTCCGCCGTCTCCACTAAACCGGAGTCTCTTTCCCCATCTTCAGGAAACAACAATATCTCTATAATTCTGGCTATTGCCGTCCCAATTGTCGTTGCGGTGCTACTTTTCATTGTTGGCGTCTGCTTCCTACGCAAGAGGGCAAGCTATAAATACAATAACTCTTTTGGCCACGATTCGAGTAATCTCTCTTTCTCCGTCAAAGTGATTGTTTCGTGTAATCTGTCTCACTTGCCTTTCATTTGGTGGCTGATGATTACTATCTTTCTTTGCTGTGTAGTTGTGGAAGGTCTTAGCGATGGGGATTCCTTGCAATTTGACCTGGCTACGATTGAAGCTGCCACGAACAGATTCTCGGATGAAAACAAGATTGGCAAAGGTGGATTTGGGGTGGTTTATAAGGGTGTCCTACCTGACGGACATGAGATAGCTGTGAAAAGGTTGTCAGTAACCTCCTTGCAGGGTGCAGTAGAGTTCAGGAATGAAGCCGCCCTTGTGGCCAAGCTTCAACATAGAAATTTAGTGAGACTATTGGGATTTTGCTTGGAGGGCCAGGAAAAGATTCTTATCTATGAATACATACCAAACAAAAGCCTTGATTACTTTCTATTCAATTCTATGAAGCAAAGAGAGTTAGATTGGTCACAACGCTACAAGATTATAGTTGGCATTGCAAGAGGAATTCTTTATTTACATGAAGATTCTCAACTTAGAATTATTCACCGTGATGTCAAAGCTAGCAATGTTTTATTAGATGAAAATATGAACCCGAAGATTTCTGATTTTGGCATGGCAAAGATTTTCCAGGCAGACCAGACTCAAGTAAATACAGGAAGAATAGTTGGGACTTATGGTTACATGTCTCCGGAATATGCAATGCGTGGTCAGTTTTCCATGAAATCGGATGTGTTCAGCTTTGGTGTCTTGGTCTTGGAGATTGTGAGTGGCAAGAAGAATACTGATTTTTATCAATCGAATCACGCTGATGACCTCTTAATCTTTGTGAGTATAAGCAATAGTAATTTCTTTCCTTCTGCTCTGCTGATGCCATGGGTAGCTGCAATACCTATCGGTACAGACTCTCAGTGGGCTTGGAAGAAATGGACAGAGCAAACACCAATGGAGTTTGTGGATCCAACTCTGAGAGGTTCTTGTTCAAGAAATGAAGTAAACAGATGCATCCACATTGGTTTATTATGCGTTCAGGAAAATCCATCAGACCGACCATCAATGTCCACAATTGCACTTATGCTGAACAGTTATTCAGTGACCATGTCAATGCCACGACAACCAGCATCTTTCCTGCGTGGAAGAAATCCTAACAGGCTTAACCGACAGCTTGACTCTGATCAGTCTACCACCGATCAATCTACCTCCTGTTCAATTCCATACTCTGTGAATGAAGTATCCATCACTGAAGTATACCCTCGCTAA 2172 0.4461 MCILKSSSTHLVIILSLFLFLNFASEAAPTYATQACTDESFYLPNTTFQTNLNLLLSSLVSNATLHDGYYLTNISLGAPGEVKGLFLCRGDVTPSVCHDCVAAAADNITRLCTNTTESVIWYDECMVRYSNLSFLNNIVPSVGMSSQQSVPDSDSTSFNNFLASALNGAVLDAVNSLSGRMFATREANFTSSMNLYALAQCRPDLSAFDCNMCLKSATSNLGEGKRGARSLLPGCNVRYELYPFYNVSAVSTKPESLSPSSGNNNISIILAIAVPIVVAVLLFIVGVCFLRKRASYKYNNSFGHDSSNLSFSVKVIVSCNLSHLPFIWWLMITIFLCCVVVEGLSDGDSLQFDLATIEAATNRFSDENKIGKGGFGVVYKGVLPDGHEIAVKRLSVTSLQGAVEFRNEAALVAKLQHRNLVRLLGFCLEGQEKILIYEYIPNKSLDYFLFNSMKQRELDWSQRYKIIVGIARGILYLHEDSQLRIIHRDVKASNVLLDENMNPKISDFGMAKIFQADQTQVNTGRIVGTYGYMSPEYAMRGQFSMKSDVFSFGVLVLEIVSGKKNTDFYQSNHADDLLIFVSISNSNFFPSALLMPWVAAIPIGTDSQWAWKKWTEQTPMEFVDPTLRGSCSRNEVNRCIHIGLLCVQENPSDRPSMSTIALMLNSYSVTMSMPRQPASFLRGRNPNRLNRQLDSDQSTTDQSTSCSIPYSVNEVSITEVYPR 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03284 723 Gene3D Phosphorylase Kinase; domain 1 340 439 - -
Vimu3g03284 723 ProSiteProfiles Gnk2-homologous domain profile. 138 244 IPR002902 -
Vimu3g03284 723 MobiDBLite consensus disorder prediction 679 706 - -
Vimu3g03284 723 Gene3D - 28 134 IPR038408 -
Vimu3g03284 723 Gene3D - 142 244 IPR038408 -
Vimu3g03284 723 Pfam Protein tyrosine and serine/threonine kinase 367 661 IPR001245 GO:0004672|GO:0006468
Vimu3g03284 723 Pfam Salt stress response/antifungal 155 242 IPR002902 -
Vimu3g03284 723 Pfam Salt stress response/antifungal 36 131 IPR002902 -
Vimu3g03284 723 SUPERFAMILY Protein kinase-like (PK-like) 350 690 IPR011009 -
Vimu3g03284 723 Gene3D Transferase(Phosphotransferase) domain 1 440 676 - -
Vimu3g03284 723 FunFam cysteine-rich receptor-like protein kinase 10 440 671 - -
Vimu3g03284 723 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 29 134 - -
Vimu3g03284 723 ProSiteProfiles Protein kinase domain profile. 364 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03284 723 ProSitePatterns Protein kinases ATP-binding region signature. 370 392 IPR017441 GO:0005524
Vimu3g03284 723 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 25 719 - -
Vimu3g03284 723 CDD STKc_IRAK 370 665 - -
Vimu3g03284 723 ProSiteProfiles Gnk2-homologous domain profile. 30 134 IPR002902 -
Vimu3g03284 723 ProSitePatterns Serine/Threonine protein kinases active-site signature. 485 497 IPR008271 GO:0004672|GO:0006468
Vimu3g03284 723 SMART serkin_6 364 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03284 723 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 339 439 - -
Vimu3g03284 723 MobiDBLite consensus disorder prediction 683 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03284 Vimu-Chr3 46464316 46467236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03284 12 723 Receptor kinase-like Gene Family AT4G05200 45.602 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu3g03284 PK_Tyr_Ser-Thr 5.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03284 - - vun:114191833 1174.46