Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03275 ATGATGATACCTATGGCTGCCATCTTTTGCATGCTTGCTTTGCTTCTCTCTTGTCTAATATCTGGAACCAGGGCCGAGTATAACATCAAGTACTGTTATCAGAAGAAAGGGAACTATACAATCAATAGCACCTTTCAAAACAATCTCAACACCATTCTATCCACGCTGTCTTCCCACACAGAAATTAACTATGGTTTCTACAACTTCTCATATGGTCAAAACAGTGACAAAGTAAACGTAATTGGGCTGTGCAGAGGAGATGTTAAGCCGGACGAGTGCCGCGGGTGCCTCAAAGATTCTGCAGTCACAATCACACAGCTTTGTCCAAACCAGAGAGAGGCCCTTCTGTGGTTCAACACTGTCAAATGCCTATTGCATTATTCTAATCGCCCAATATTCGGTGTCATGGAAACTTATCCTGGCTTCAAGATGACGAACACAAACAATGTAATGGAATCGGATAACTTTAACCAAGCAGTCTCAAACTTAATGAGGAATCTCACAGTTGTGGCTGCATCAGGTGACTCTCGTCGTAAGTATGCTACGGGTAGGGCTATTGCATCAAATTTTACAACCGTTTACGTATATGGTCTTGTGCAGTGCACCCCTGATTTGTCTGAGAAAGACTGCAGTTTATGCTTGGAATCGGCTATCTCAGAAATCCCATCGTGTTGTGTGAACACGATAGAAAGTATACTTGTTAGACCAAGTTGTAATATTAGATTCAGAAACGATATATTCTACGATCAAACGCCTAAATTAGACCCTGATGTAACAGCACCATCTCCATCACCTCCTTCCCCCCTGAGTTACACTTCCCCCGAAGGAAGCAACAACACGTTATTTAAGGAGGAAGAAAGCAAGAAAAACTCTAGCAGGCAAGTTCCAACTACCCATGGATACATGGCACCGGAGTACATAATGCACGGACAATTTTCGGTGAAGTCAGATATCTTTAGTTTTGGTGTACTGCTTCTTGAGATCGTAAGTGGCCAGAAAAACAGTAGCTTTCGTCGTGGGGAGAATGTTGAAGATCTACTGAGCTTCGCATGGAGAAAGTGGAGGGAGGGAACAGCTGTAAACATTGTAGATCCATCATTGAACAACAATTCAATAATAAATGAAGTGATGAGATGCATTCATATTGGTTTGCTCTGTGTTCAAGAGAATTTAACTGACAGGCCAACCATGGCGACCGTTATGCTCATGCTGAGTAGCTATTCTCTCAGTCTTCCTATCCCTTCTGAACCTGCATTTTATGCCCACAGTACAACTAGAAGCCTTCCAGCCACGCTTTCATGGGGGCACAGTTCAAGGGCAACAACAAACAAATCTGCTCTAGATTCAGAAAATGAGAATTCAATTACTGAACTGTACCCTCGCTAG 1386 0.4278 MMIPMAAIFCMLALLLSCLISGTRAEYNIKYCYQKKGNYTINSTFQNNLNTILSTLSSHTEINYGFYNFSYGQNSDKVNVIGLCRGDVKPDECRGCLKDSAVTITQLCPNQREALLWFNTVKCLLHYSNRPIFGVMETYPGFKMTNTNNVMESDNFNQAVSNLMRNLTVVAASGDSRRKYATGRAIASNFTTVYVYGLVQCTPDLSEKDCSLCLESAISEIPSCCVNTIESILVRPSCNIRFRNDIFYDQTPKLDPDVTAPSPSPPSPLSYTSPEGSNNTLFKEEESKKNSSRQVPTTHGYMAPEYIMHGQFSVKSDIFSFGVLLLEIVSGQKNSSFRRGENVEDLLSFAWRKWREGTAVNIVDPSLNNNSIINEVMRCIHIGLLCVQENLTDRPTMATVMLMLSSYSLSLPIPSEPAFYAHSTTRSLPATLSWGHSSRATTNKSALDSENENSITELYPR 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03275 461 FunFam Cysteine-rich receptor-like protein kinase 10 140 247 - -
Vimu3g03275 461 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 11 254 - -
Vimu3g03275 461 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 25 132 - -
Vimu3g03275 461 MobiDBLite consensus disorder prediction 441 461 - -
Vimu3g03275 461 MobiDBLite consensus disorder prediction 253 296 - -
Vimu3g03275 461 ProSiteProfiles Gnk2-homologous domain profile. 27 132 IPR002902 -
Vimu3g03275 461 ProSiteProfiles Gnk2-homologous domain profile. 138 247 IPR002902 -
Vimu3g03275 461 FunFam Os07g0555700 protein 290 410 - -
Vimu3g03275 461 Pfam Protein tyrosine and serine/threonine kinase 284 401 IPR001245 GO:0004672|GO:0006468
Vimu3g03275 461 Gene3D - 140 247 IPR038408 -
Vimu3g03275 461 Gene3D - 25 131 IPR038408 -
Vimu3g03275 461 SUPERFAMILY Protein kinase-like (PK-like) 292 431 IPR011009 -
Vimu3g03275 461 Gene3D Transferase(Phosphotransferase) domain 1 276 411 - -
Vimu3g03275 461 Pfam Salt stress response/antifungal 148 244 IPR002902 -
Vimu3g03275 461 Pfam Salt stress response/antifungal 32 129 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03275 Vimu-Chr3 46411561 46414382 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03275 281 461 Receptor kinase-like Gene Family AT4G23140 47.849 5.34e-51 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu3g03275 PK_Tyr_Ser-Thr 1.5e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03275 - - var:108324778 469.544