Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03266 ATGGAAGACCCGAATTTAGATGGGAACAGTGGCAAGAGAGCATTCGATTGGGGAGTTTGGGTCAACAGAGAGAAAGTAGGGAACAGAACAGAAGTAAAAGAAAGCCTCCACGTTTTCCGCGTCATGGATCCGCTGCCGGCAGCGCTCCGGTGGCGCACGACCGCCATCCCATTCCTCTTGGCGGTCCTCCTTTTATCCTCCGTCTCCCCTTCGCGCGCAATCTACTGCGACGAAGATGATTGCTACGATCTGCTTGGGGTTTCTCAGAGTGCCAATGCTTCCGAAATCAAGAAAGCTTACTACAAACTCTCCTTGAAGCATCATCCAGATAAGAACCCTGATCCCGAATCGCGAAAGCTGTTTGTTAAAATCGCCAATGCTTACGAGATTTTGAAGGACGAGGCCACGCGCGAACAATATGATTATGCAATTGCACATCCAGAGGAGGTGCTTTATAATACTGCACGCTACTATCGGGCATACTATGGTCACAAGACGGATCCTCGAGCTGTGTTGGTTGGCCTTCTTATTATTCTTTCAGGTTTTCAATATCTAAATCAATCAACAAGGTATAATCAGGCTGTAGCCATGGTCAAGAAGACACCTGCATATAAAAATAAATTAAGGGCATTGGAACTTGAACGCAGTGGAGGGATTACAAACAAGAAGAAGAGTCAGAAGAATACGGTCAAGAAAGTGGAGCAAGACCTTAGCAATGAACTCGACCTGCAGATAACTGGAGCTGAAAGGGCCTCTGTGTGGAAACTTCTTGGTGTCCGCTTTGTTCTATTACCTTATACCTTAGGCAAGCTGCTACTTTGGTCTGCCTGCTGGTTTTGGAGATACAGAGTGAAGAAACACTCTTATTCTTGGGAGGATGCTTCTTATCTAACACAAAGATCCCTTGGTATTCCTCTCGATAGATGGAAACATATTGATGAAGCAACAAAGGAAGATCTTGTGCTCAAACGCTTATGGGAGAAATCGAATATGGAGAGCTATGTAGCAGAGATGCGGAAAGAATCAAAACGCAGAAGATAG 1041 0.4553 MEDPNLDGNSGKRAFDWGVWVNREKVGNRTEVKESLHVFRVMDPLPAALRWRTTAIPFLLAVLLLSSVSPSRAIYCDEDDCYDLLGVSQSANASEIKKAYYKLSLKHHPDKNPDPESRKLFVKIANAYEILKDEATREQYDYAIAHPEEVLYNTARYYRAYYGHKTDPRAVLVGLLIILSGFQYLNQSTRYNQAVAMVKKTPAYKNKLRALELERSGGITNKKKSQKNTVKKVEQDLSNELDLQITGAERASVWKLLGVRFVLLPYTLGKLLLWSACWFWRYRVKKHSYSWEDASYLTQRSLGIPLDRWKHIDEATKEDLVLKRLWEKSNMESYVAEMRKESKRRR 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03266 346 PRINTS DnaJ domain signature 100 115 IPR001623 -
Vimu3g03266 346 PRINTS DnaJ domain signature 116 136 IPR001623 -
Vimu3g03266 346 PRINTS DnaJ domain signature 82 100 IPR001623 -
Vimu3g03266 346 ProSiteProfiles dnaJ domain profile. 80 144 IPR001623 -
Vimu3g03266 346 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 25 58 345 IPR044632 GO:0006457
Vimu3g03266 346 Pfam DnaJ domain 80 141 IPR001623 -
Vimu3g03266 346 SUPERFAMILY Chaperone J-domain 75 147 IPR036869 -
Vimu3g03266 346 CDD DnaJ 80 133 IPR001623 -
Vimu3g03266 346 ProSitePatterns Nt-dnaJ domain signature. 121 140 IPR018253 -
Vimu3g03266 346 SMART dnaj_3 79 136 IPR001623 -
Vimu3g03266 346 Gene3D DnaJ domain 66 167 IPR036869 -
Vimu3g03266 346 FunFam Chaperone protein dnaJ 50 67 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03266 Vimu-Chr3 46333067 46336086 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03266 82 152 C2H2 Transcription Factor Family AT1G74250 32.468 6.29e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03266 K19371 - gmx:100792705 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03266 3 46333067 46336086 Vimu3g03266 3 46333067 46336086 ECH