Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03252 ATGTATCAGTACAACACCAACTCTTGGAATTCTCAACAACAACAACAGTCTATACTAGAAAAGCCTCCACAAAGGACATTCTTGGAGAACGATTTGGGAAGGAACATAGATGGTGAATCTTCTAGTAATGAAAGGAAAGTTCCTTCCTCTAATCGAGATCCCGGCAAACAAAGTGGAAAAAAGCGTTACCATCGACACACTAATGAACAGATAATGGAGATGGAATGTTTCTTTAAGGAGTGTCCTCACCCAGATGACAGACAAAGGAGAGAGCTGAGCAGAGAGCTGGGATTGGATATGTTGCAGGTCAAGTTCTGGTTCCAAAACAAGCGTACCCAAGTGAAGTCTCAACATGAACGCCACGAGAACAATCTTTTAAAGGCTGAGAATGACAAGCTTCGTGAAGAGAACACTAGGTACAAGGAGGCACTAAGTCATGCTTGTTGCCCTAATTGTGGAGGCCTCAGTGGAGAAATGTCCTTTGACGAGCAACAGCTGAGAGCTGAGAATATGCGATTGAGAGAAGAGATTGAAAAGATGTCAGCAATGATACCAAGATTTGCTGTAAAACCTGGGAGTTTATATCATAACATGCCATCTCAAAACCAGATGATTCCTCCTCGGTCCGTTGATCAGGGTGTTGGAAACTATGGAGCACAGACAGTTATGATAGGGGAAATGTTTGGTGGCAATGATGAACCCCTTGGGGCACTCCCAATTGCTAATGATTTTGAGAAAGACATCGTTATGGAGATTGGTAGCGTAGCAATGAAGGAATTCACAAACCTGGCTGAGGCTGGAAATCCTTTGTGGCTCCCTGGAAGCTGTGGCTGTGAGATTCTGAACCAGGATGAATATCTGAGATCTTTCCCTAAGGGAATAGGCCCAACACCCCTAGACGTAAAAATCGAAGCTTCAAGGCATTCCGCAGTGGTCATCATGAATTACAATAAACTCGTTGAGATCTTTATGGATGTTAATCAATGGGCAAACATGTTTTGCGGTATCATTTCAAGGGCGGCGATACATCAAGTGCTGGAAGTTGGCCAAACAGAAATCTTCGACGGAGCCTGTCAAGTGATGTCAGCTGAGTTCCAAGTCCCTTCACCGCTTGTTCCTGTTCGTGATGACTATTTTGTGAGGTTCTGTAAGAGAAAAAATTTAGAATCATGGACTATTGTTGATTTTTCCATGGATCAGCTGCGACCTGGTTCATTCACAAAAAGCCGAAGACGACCCTCTGGTTGCCTAATCACAGAATTGCCAAATGGTTACTCAAAGATTGTTTGGATTGAACATATAGAACTGGAAGATAATGAAGTGCATGATCTTTACAAAAGCTATGTTAATTCTGGCCTCGCCTTTGGAGCTAAACGCTGGGTGGCATCCTTGGATAGACAATGCGAACGTCTTGCAAGTTCAATGGCCACGAACATACCCCATAAGAGCATCGGTGTGCTAACAAATTCTGGGGGACGAAGAAGTATGATGAGGCTGGCCGAAAGAATGATGTTGAGCTTTTGTACTGCTGTTGGTGCATCTACTGCAAATGCTTGGACACTATTAACAGAGACCGGTGAAGATGTAAGGGTCATGACCAGAAAAAGTGTGGATGATCCAGGAAGACCTTCTGGTATTGTGCTCAGTGCTTCAACTTCTTTGTGGCTCCCCCTTCCTTCAAGGACCGTTTTTGATTTTCTGCGATCTGAAAACTCAAGAAATCAGTGGGACATTCTCTCTAACGGAGGACAAGTGGAAGAATTGGCACACATTGCCAATGGTCATGACAGTGGCAACTGTGTCTCCTTGCTTCGAGTCAACACTCCGAATTTCGGCCAAAGCAATATGACCATGCTTCAAGAGACTTGCACTGATGCCACAGGCTCGCTTGTTGTGTATGCTCCTGTTGATTTAATTTCCATGAATGCTGTGTTGAGAGGTGGAAATCCTGATTGTGTCGCCCTGCTGCCCTCGGGCTTTGCTGTTCTTCCTGATGGGCCTGAACCGATGAACAACGGAGGACCCATTCGTGAGGTTGGATCTGGAGGTTGCCTTCTAACAGTGGCATTTCAGATATTGGTTGATTCTGTTCCAACTTCAAAACTCTCTGCTACTTCAGTGACCACTGTTAGCAGTTTAATCAAGTGCATAGTTGAGCGGATCCAAGCCGTAGTGTGCAATGGCGGCACTTAG 2193 0.4473 MYQYNTNSWNSQQQQQSILEKPPQRTFLENDLGRNIDGESSSNERKVPSSNRDPGKQSGKKRYHRHTNEQIMEMECFFKECPHPDDRQRRELSRELGLDMLQVKFWFQNKRTQVKSQHERHENNLLKAENDKLREENTRYKEALSHACCPNCGGLSGEMSFDEQQLRAENMRLREEIEKMSAMIPRFAVKPGSLYHNMPSQNQMIPPRSVDQGVGNYGAQTVMIGEMFGGNDEPLGALPIANDFEKDIVMEIGSVAMKEFTNLAEAGNPLWLPGSCGCEILNQDEYLRSFPKGIGPTPLDVKIEASRHSAVVIMNYNKLVEIFMDVNQWANMFCGIISRAAIHQVLEVGQTEIFDGACQVMSAEFQVPSPLVPVRDDYFVRFCKRKNLESWTIVDFSMDQLRPGSFTKSRRRPSGCLITELPNGYSKIVWIEHIELEDNEVHDLYKSYVNSGLAFGAKRWVASLDRQCERLASSMATNIPHKSIGVLTNSGGRRSMMRLAERMMLSFCTAVGASTANAWTLLTETGEDVRVMTRKSVDDPGRPSGIVLSASTSLWLPLPSRTVFDFLRSENSRNQWDILSNGGQVEELAHIANGHDSGNCVSLLRVNTPNFGQSNMTMLQETCTDATGSLVVYAPVDLISMNAVLRGGNPDCVALLPSGFAVLPDGPEPMNNGGPIREVGSGGCLLTVAFQILVDSVPTSKLSATSVTTVSSLIKCIVERIQAVVCNGGT 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03252 730 CDD START_ArGLABRA2_like 246 469 - -
Vimu3g03252 730 SUPERFAMILY Bet v1-like 492 722 - -
Vimu3g03252 730 SUPERFAMILY Homeodomain-like 53 123 IPR009057 -
Vimu3g03252 730 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
Vimu3g03252 730 CDD homeodomain 60 118 IPR001356 GO:0003677
Vimu3g03252 730 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Vimu3g03252 730 SMART HOX_1 59 121 IPR001356 GO:0003677
Vimu3g03252 730 FunFam Homeobox-leucine zipper protein HDG1 46 133 - -
Vimu3g03252 730 Coils Coil 163 183 - -
Vimu3g03252 730 Pfam Homeodomain 60 115 IPR001356 GO:0003677
Vimu3g03252 730 Coils Coil 111 143 - -
Vimu3g03252 730 Pfam START domain 256 470 IPR002913 GO:0008289
Vimu3g03252 730 SUPERFAMILY Bet v1-like 243 472 - -
Vimu3g03252 730 MobiDBLite consensus disorder prediction 1 65 - -
Vimu3g03252 730 ProSiteProfiles START domain profile. 242 473 IPR002913 GO:0008289
Vimu3g03252 730 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 59 725 IPR042160 -
Vimu3g03252 730 MobiDBLite consensus disorder prediction 1 23 - -
Vimu3g03252 730 Gene3D - 44 133 - -
Vimu3g03252 730 SMART START_1 251 470 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03252 Vimu-Chr3 46253609 46259588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03252 4 729 Homeobox Transcription Factor Family AT4G04890 59.067 0.0 875
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu3g03252 START 2.2e-45 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03252 K09338 - gmx:100793758 909.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03252 3 46253609 46259588 Vimu3g03252 3 46253609 46259588 ECH