Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03251 ATGAGAAACTCTCTTCATCCTGTAGTTGACTATAGAATGGATAAAACACTAGGTAGAAGTGTGGAAATGAGTAAAAGGCAACAAATACAGTATTCTGAGTGTAATCAATTTTCAACTTCTATCACCTACAGTCCTAGTAATGGATATCAGCCTGAAATATTAAAAGCTTTAATTGATGCATATGGCAAAGAAGAAAGCCGAGAATGTCCAAGCAGTAAACCACTATCAGTTGAACAGATGCATAGAAACTGTATAGACAATAAAGTGTGGTCAAAATCATGGCAGAATACAGAAGAGGAGGAGTTTGACTGGGAAGATGTGAAGTCAACCATAGTAGACCGTAGCAGGAATAAAAGTTCATTACCTTCAACCGGTTTTTTCTCCAGGGAAATACCTGTTGTTGCAGCTAGTGCAACTTTGTCAGAGCAAAATGCCAGCAAGGGTTGGTCAACTGGATCTCAGCTTCCTCTACGTCATGATTCATCTGCTATGGCGATGAAGCATAGCCTGGTCTCCTCTCAATCTCATGATGCTATGAAGATTTCTCATCATCGCTATAACTCGTCTCAACATATCTTTAGTAGAATGGGTCAATCAAGGACTCTTACGAACACTCCAATTAATCACTTTCCCAAAAGGTATGAAAACCCAAATGGGGTTCGACATGCAGTGCCGATAATGGCTTCTGGCATTCCCTCTAATGTGAAACCTCCACCATCAGTTGTGCTTGCAGCTTCTGAAACAACACCTTCTGTAAATCAGAATGTCACTCGATCTCCTACTATGAAGCATGCTGTAAATAACTCTATGATTGTACCAGCACAATCAGTTGGCGCCTTTGAGAACAAGGATGCATATACTACACATATGCATCAGTTTCCTCAGAAACTTCCTGGTCAAGTTTCTTCCAACCAGAAAAATCACTGGAAAGCACCACAGCCCAAGTTTTTTCCATCTCAGGATCCATCAACCCAACAGTATGGTCATGGGATGGATTTTTTTAAGAGACCTGGTGCATCTACAAGTACAACCATGTCGAATACGTCACCTACTGTGCTATTCCCTTCACCACTCCCAAATATTGCAAACTACCCTTTTCATCTAGGTCACCCTCCTGCTTCATCTCAAATGATAATACCTCATCCGAATGTTGGTCCGTTTATGTCAAGCAAACAGCCACCAGTTACCGATCAAATTTCTCATGCTGACATCTCATCGGATAAACTACTGCCACCACAGAATTCCATCGGAACCGAGTTTAAAGCAGACATTATGAAGGTTCGACATGAGTCTGTAATTAATAGCTTGTATGCTGATCTCCCCAGACAATGCAGAACATGTGGGCTGAGATTCAGAAGCCAAGAGGAACACAGAAGTCACATGGATTGGCATGTGGCCAAGAATCGGAAGCGGAGAATCTGTGGTGAATGGTTTGTGAGGGAGAGGATGTGGCTTACTGGTGCAGACACAGTGGGAAAAAAGTCAGTTGCAGCTTTTTTTCCGACAGAAAGAAAAGAAGAAAGGAAAGATGAACAAGAGTTGGGTGTGGTAGCAGAAGAGGAGCAGAAAAGATGTGCATTGTGTGAAGAGGGTTTTGAGGAGTTTTACAGTGATGAAATGGAGGAGTGGATGTATAGAGGAGCTGCATACCTGTATCAACCCACAGGAAAATTAGCAACAAGCATGGAGAGGTCACAGTTAGGTCCCATAATTCATGCTAAATGCAGATCAGAACCTAAAATGCCTCTCTCCCAACATCTTCCAGAGGAAGAGGGTACTCCAAATAAACGAATGCGGATTTGA 1803 0.4221 MRNSLHPVVDYRMDKTLGRSVEMSKRQQIQYSECNQFSTSITYSPSNGYQPEILKALIDAYGKEESRECPSSKPLSVEQMHRNCIDNKVWSKSWQNTEEEEFDWEDVKSTIVDRSRNKSSLPSTGFFSREIPVVAASATLSEQNASKGWSTGSQLPLRHDSSAMAMKHSLVSSQSHDAMKISHHRYNSSQHIFSRMGQSRTLTNTPINHFPKRYENPNGVRHAVPIMASGIPSNVKPPPSVVLAASETTPSVNQNVTRSPTMKHAVNNSMIVPAQSVGAFENKDAYTTHMHQFPQKLPGQVSSNQKNHWKAPQPKFFPSQDPSTQQYGHGMDFFKRPGASTSTTMSNTSPTVLFPSPLPNIANYPFHLGHPPASSQMIIPHPNVGPFMSSKQPPVTDQISHADISSDKLLPPQNSIGTEFKADIMKVRHESVINSLYADLPRQCRTCGLRFRSQEEHRSHMDWHVAKNRKRRICGEWFVRERMWLTGADTVGKKSVAAFFPTERKEERKDEQELGVVAEEEQKRCALCEEGFEEFYSDEMEEWMYRGAAYLYQPTGKLATSMERSQLGPIIHAKCRSEPKMPLSQHLPEEEGTPNKRMRI 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03251 600 ProSitePatterns Zinc finger C2H2 type domain signature. 444 464 IPR013087 -
Vimu3g03251 600 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 28 581 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03251 Vimu-Chr3 46235006 46237135 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03251 349 599 C2H2 Transcription Factor Family AT4G04885 43.682 4.08e-63 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu3g03251 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03251 K14400 - gmx:100794796 598.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03251 3 46235006 46237135 Vimu3g03251 3 46235006 46237135 ECH