Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03250 ATGTTCTCCCAAAATCTGATTCTCCCTCCCGAAAACCCTAGACCGGCGGCCTCGTTCGCTTCAAAACCCATGAGCAATGAGATCGCAATCGCTGCGCAGAAACCTCCTCCGTCGATTCTCGTTGGCCGCTTCAAGGCACTCCTCAAACAGCGTGATGACGAACTCAGACTCGTCGCAGGCGTTCCCGTTCCGCCCCCGACAACAGATGAAATCGTCCAGATTTACGACCTCCTTTTGTCGGAACTCACCTGTAATTTGAAGCCTATCATCACCGATCTCACAATCATCGCCGAACAGCAGAGGGAGCACGCCAAAGGCATCGCTGATGCAATTTGCGCTCGGATTCTCGAGGTGCCAGCAGATCAAAAGCTCCCCTCACTCTATTTGTTGGACAGTATTGTGAAGAATTTTGGGCAGGAATACATTAAATACTTCTCTTTACGTCTGCCAGAAGTTTTTTGTGAGGCATACAGGCAGGTTCAGTCTAGTTTGCATCCTGCTATGCGGCATCTTTTTGGGACATGGTCAAAAGTTTTTCCCCCTTCTGTCCTACGCAAGATTGAAGCTGAATTGCAATTCTCCGTAGCAGTTAATACCCAATCATCCACCCTGAATGCTGTAAGGGCTTCTGAATCTCCGCGGCCTAGTCATGGCATACATGTTAATCCAAAATACCTGCGCCACTTGGATCCCTCAACCGTGGATAGTGTTGGTGCTGAAAAGTTGGATTCATCAGGAAATGCCAATAATACAAACTTTGGCATTCTAGGTAGTAAGACACACCAAATTTTATCAGGCAGTGGCAGGCTGGGAATATCCTCTTCCCCTTCAAGAAGTGGACTTGATAGGCCTTTGTCTGCACCCATGGATGAGTATGCAGCTGACAGTTCCGCTAACAGATTAATTGAGAGAGACTCTTCTCATCCTGCTGTTGATTATGGAGTAGGCAAGGCAATAGGTAGAGATATGGAGTTGAGTGAATGGCAACGAAAGCAGTATGCTGGTGATGGTCGTAATAGGTTTCCAACTTCTATCACATACAGCCTTAGTAATGGACATCAGCGTCAAAGTCCCAGAGCTTTAATCGATGCATATGGCAGTGACAAAAGTCAAGAAACTTCAAGTACTAAGCCTTTGCTAGTAGAACGGCTTGATAGAAATGGTATAGACAACAAGGTATTGCCTACATCGTGGCAGAATACCGAAGAGGAGGAATTTGATTGGGAAGATATGAGTCCAACCTTAACTGATCATAGTAGAAATAACAGTATATTGCCTTCAACTATTGGATTCACCAGGGAAAGGCCTGTTGTTGCAGCTAATGCCGCTTTGTCAGAGCATGATTCCAGGAAGGGGGTTTGGTCTAGTGGATCTCAGCTTCCTCCAGTGGATGATTCTTCTGCTGTAGCAGAAGATGCATTTTCTTCTTTGGGTTTTCGACGACAACCACTGGGACAGGTACCTGGATTCCAAAATCATGTCAATCATAGTCTAGGTTCTTCTCATCATCTGTCCAACTCGTCACAACATATCTTTGGTAATAGGGGCAGGGCAAGAACTCTTACATTTCCTCCTATTGATAACATTCACAATGCCGATACAAATCCATATCGGGTTCGACCTGCAGTATCAAGGATGGTTTCTGGCCGTGTCTCTAATGTGGAACCTAGACCATCAGTTTTGCCTGCAACTCTTGAAATAAGGCCTTCTGTAAATTTGAATGTCACTCGACCACCTGCATTAAATCCAATAACTCCATTACAAAAACATGTTAGGAGTCAGTTTGAAGCTTTACATACTAGTAACCCTATTGTGAATCATGTAAATAAATCTTCATTTATGCCAGAGCAGTCATTTGACAGTGTTGAGAACAAGGATGCAAGTATTTTGAAGATACATCAGTTGCCTAATCAGCTTCCTGGACTAATTTCGTCCAACCAGCAAAATCACAGGCAAGCACCACAACTGCAGTTTTTCCCACCATCTCAGGATTCGTCAAACTCACAATTTAGTCATGGGAGTTCTTTGCAGGGACATGGTGCTTCTATAAGTACTGCCATGTCGAATCCGTTACCTATTATGCAATTCCATTTGCCACTGCAAAATGTTGCAAATAACCCTTTACATTTACAGGGTGGAGCCCGTCCACCTTTACCTCCAGGTCGCCCTCCTGTCCCACCACAAATGATACCTCATCCAAATGCCAGTCCATTTATGTCAAGCCAACAGCCAACTGTTGGATATACTAATTTAATTAGTTCTCTAATGTCTCAAGGTGTGATCTCGTTGGCCAACCAGCTGCCTGCACAGGATTCTGTTGGAACTGAGTTCAATCCAGATATACTGAAGCTTCGTTATGAGTCTGCTATCAATGCCTTGTATGGTGATCTCCCAAGACAATGCACAACTTGTGGACTCCGATTCAGATGCCAAGAGGAACACAGTAGTCATATGGATTGGCATGTGACAAAGAATCGGATGTCTAAAAGCCGGAAGCAGAAACCCTCTCGGAAGTGGTTTGTGAGTGACAGGATGTGGCTTAGTGGTGCAGAGGCATTGGGAACTGAGTCAGTTCCAGGTTTTTTGCCTACGGAAACCATAGAAGAAAAGATAGATGATGAAGAGTTGGCTGTTCCAGCAGAAGAGGATCAAAATACTTGTGCATTATGTGGAGAGCCTTTCGATGAGTTTTACAGTGATGAAATGGAGGAATGGATGTATAGGGGAGCTGTATACCTCTATGCTCCCACGGGGACAACAGCAGGCATGGACAGGTCACAGTTAGGCCCCATAATTCATGCTAAGTGCAGATCAGAATCTAATATGGCACCATCCGAAGATCTTGGGCCGGATGAAAAGGGTGGTGATGAAGAGGGTACCCAAAGGAAGCGAAGGCGTAGTTGA 2904 0.4508 MFSQNLILPPENPRPAASFASKPMSNEIAIAAQKPPPSILVGRFKALLKQRDDELRLVAGVPVPPPTTDEIVQIYDLLLSELTCNLKPIITDLTIIAEQQREHAKGIADAICARILEVPADQKLPSLYLLDSIVKNFGQEYIKYFSLRLPEVFCEAYRQVQSSLHPAMRHLFGTWSKVFPPSVLRKIEAELQFSVAVNTQSSTLNAVRASESPRPSHGIHVNPKYLRHLDPSTVDSVGAEKLDSSGNANNTNFGILGSKTHQILSGSGRLGISSSPSRSGLDRPLSAPMDEYAADSSANRLIERDSSHPAVDYGVGKAIGRDMELSEWQRKQYAGDGRNRFPTSITYSLSNGHQRQSPRALIDAYGSDKSQETSSTKPLLVERLDRNGIDNKVLPTSWQNTEEEEFDWEDMSPTLTDHSRNNSILPSTIGFTRERPVVAANAALSEHDSRKGVWSSGSQLPPVDDSSAVAEDAFSSLGFRRQPLGQVPGFQNHVNHSLGSSHHLSNSSQHIFGNRGRARTLTFPPIDNIHNADTNPYRVRPAVSRMVSGRVSNVEPRPSVLPATLEIRPSVNLNVTRPPALNPITPLQKHVRSQFEALHTSNPIVNHVNKSSFMPEQSFDSVENKDASILKIHQLPNQLPGLISSNQQNHRQAPQLQFFPPSQDSSNSQFSHGSSLQGHGASISTAMSNPLPIMQFHLPLQNVANNPLHLQGGARPPLPPGRPPVPPQMIPHPNASPFMSSQQPTVGYTNLISSLMSQGVISLANQLPAQDSVGTEFNPDILKLRYESAINALYGDLPRQCTTCGLRFRCQEEHSSHMDWHVTKNRMSKSRKQKPSRKWFVSDRMWLSGAEALGTESVPGFLPTETIEEKIDDEELAVPAEEDQNTCALCGEPFDEFYSDEMEEWMYRGAVYLYAPTGTTAGMDRSQLGPIIHAKCRSESNMAPSEDLGPDEKGGDEEGTQRKRRRS 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03250 967 SUPERFAMILY ENTH/VHS domain 67 191 IPR008942 -
Vimu3g03250 967 MobiDBLite consensus disorder prediction 401 421 - -
Vimu3g03250 967 Gene3D - 65 192 IPR008942 -
Vimu3g03250 967 Pfam CID domain 86 186 IPR006569 -
Vimu3g03250 967 ProSitePatterns Zinc finger C2H2 type domain signature. 801 821 IPR013087 -
Vimu3g03250 967 FunFam polyadenylation and cleavage factor homolog 4 64 192 - -
Vimu3g03250 967 SMART 558neu5 70 192 IPR006569 -
Vimu3g03250 967 CDD CID_Pcf11 75 192 IPR047415 -
Vimu3g03250 967 ProSiteProfiles CID domain profile. 67 195 IPR006569 -
Vimu3g03250 967 MobiDBLite consensus disorder prediction 936 967 - -
Vimu3g03250 967 MobiDBLite consensus disorder prediction 267 288 - -
Vimu3g03250 967 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 54 951 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Vimu3g03250 967 MobiDBLite consensus disorder prediction 657 683 - -
Vimu3g03250 967 MobiDBLite consensus disorder prediction 267 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03250 Vimu-Chr3 46221409 46228539 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03250 740 967 C2H2 Transcription Factor Family AT4G04885 68.122 1.04e-100 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03250 K14400 - gmx:100794796 1525.38