Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03243 TTGCGAGTCGCTCGCGCCATGGAGAAGGAGAAGGAGAAGGAGAAGCAGAATGAGCGCCACCACGCCAAGACACTCATCTGTGCCCTCAACCTTCTTTCGCGCGACCTCCCTCTCCCTCCTCATATTCTCAATTCCGTCTCTTCCATCTACCGCAATCATGTAACCTCTTCTCTTTTCTTTTTCTCTCTTTCTCTCTCCTTTCGCCAATCTTGCGTTAGCTACGTCGCCACTAGACTACTCAGTGTGCAAAACGTTGATTTCCTTTTCGGTTCCGTCGTTCATGTGTTCAGCTCTATTTTGTGTTACAGTTTACCTAGCCGTACACTTCTGGTGTCGTTTGCTTCTAGACTGTTCGATGATGGAGGTAATTCTGGAGAGGACTTGATATTGGATCTTGAAGATGCACTGTCGAAGCAGCGTCCAAACTGCGTGTCTGGTTTTAAACTGGAGAAAGCAAGGGAAAGTCGGTATCGAAGTCAGATTCAGCATCGGTTGAATGATCTTCAAGAATTGCCTTCAAGCAGGGGAGAGGACCTGCAGACAAAATGCTTGCTTGAGCTTTATGGACTAAAGCTTGCAGAGCTGCAGATGAAGGTTCGTACTGATGTGAGTTCTGAATACTGGCTCAATGCTAAGTGTGCTTATCCGGATAGGCAATTGTTTGATTGGGGCATGATGAGGCTGCGTCGTCCATTATATGGGGTTGGAGATCCATTTGCCATGGATGCTGATGATCAATTAAGGAAGAAACGGGAGGCTGAGGCATGGCATGGAAGGCAAAGACAAAGGGCAACTCGGGCAGAGAAATTGAGGTTCCAAGCCTTGAAGGCTGATGATCAAGAAGCGTACATGAGAATGGTGAAAGAGAGTAAGAATGAGAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTACTAGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAAGACAAAAAGTATTCAGATGGTATTGAGCCATTGGAAGATTCTGAAGCAGATTTACCAGAGTCAGAAAAGAATGGAATTTCTAAGGAGTCACCTACTGATGAAGATATTGATACGATCGATTCTGATCATAATGGTGATTCCAGTGATTTACTTGAAGGTCAGCGGCAATACAATTCTGCCATACATTCAATTCAAGAAAAGGTGACTGAGCAACCATCTATTCTTCAAGGTGGAGAGTTAAGACCATACCAGATAGAGGGGCTCCAATGGATGCTTTCTTTGTTCAATAACAATTTAAATGGAATTTTGGCTGATGAGATGGGGCTTGGGAAGACGATACAAACAATTTCGCTTATAGCATATCTTATGGAAAACAAGGGTGTTACTGGTCCCCACTTGATTGTTGCTCCAAAGGCAGTTCTGCCAAATTGGGTCAATGAATTCACAACATGGGTTCCTAGCATCACCGCTATTCTTTATGATGGACGGCTGGATGAGAGGAAGGCAATGAAGGAAGAGTTATCAGGGGAGGGGAAATTTAATGTTTTATTGACACACTATGATCTTATAATGAGAGATAAGGCATTTCTCAAGAAAATTCAATGGAAGTACCTGATTGTGGACGAAGGGCACCGATTGAAAAACCATGAGTCTGCTCTGGCAAGAACCTTGGACAATGGTTATCACATCCAACGAAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAGTTATGGTCTTTGCTTAATTTTCTCCTTCCAAACATTTTTAACTCAGTTCAAAATTTCGAGGACTGGTTTAATGCCCCCTTTGCAGACCGAGTTGATGTCTCCCTCACAGATGAGGAACAACTATTGATCATCCGGCGTCTGCATCAAGTAATAAGGCCCTTCATATTAAGAAGGAAAAAAGATGAGGTGGAAAAATTTCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTTACTGATGTAGGCAGAGTTGGGTTGGACAACGGTTCTGGAAAGTCAAAAAGTCTACAAAATTTAACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTATTCGTGGGAGAATATGATATGTATAAACGTAAGGAGGAGATTGTTAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACAGAGTCCTCCTTTTCTCGCAAATGACTCGACTTATGGACATTCTTGAAATCTATTTACGACTTCATGATTTTAAGTATCTTAGACTTGATGGTTCAACAAAAACTGAGGAAAGAGGCAATCTTCTAAGGAAATTTAATGCTCCCGACTCCCCATACTTTATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTTGATAGCGATTGGAATCCACAAATGGATCAACAAGCCGAGGACCGAGCACATCGCATTGGACAAAAGAAGGAAGTTAGGGTTTTTGTTTTGGTTAGTGTAGGATCAATTGAGGAGGTGATTCTAGAGCGTGCAAAACAAAAAATGGGCATTGATGCCAAAGTTATCCAAGCAGGACTTTTCAACACAACTTCGACAGCCCAGGACAGAAGAGAAATGTTAGAAGAGATTATGCGCAGAGGTACAAGCTCACTTGGGACAGATGTGCCGAGTGAGAGAGAAATTAACCGCCTTGCTGCCCGATCTGATGAAGAGTTTTGGCTGTTTGAGAAAATGGATGAAGAGAGAAGACAAAAGGAAAATTACAGATCCCGTCTCATGGAAGAACACGAATTGCCAGATTGGGTATATTCTCCAATTAACAAGGATGATAAGTCTAAAGATTTCAACAATGCTGTCACTGGAAAACGGAAAAGAAAAGAAGTGGTATACGCAGATACGTTGAGTGATCTGCAATGGATGAAGGCTGTGGAGAACGGAGAAGACATATCAAAGTTTTCAGCTAAAGGAAAAAGAAGAGACCACCACTCATCTGACAGCATTGCTCAAGCCAGCGATAACACGGTAGCAGAAGAAAGTTTAGAGTTGAGGACTGAAAGTGTTCCTATGGCAAACGATCGCACGAGTGAAGATAGTTTCCATGTGACCCCTTCTTCAAAGAGATTCAAATCTGAAGGAACAAATTTCCTGAAACATACATACGAGGATGTTGGAAGTGGTTTGAACCACCATGTGTTATCATGGAATACTCACAAAAAGAAGAGGTCAAGTTTTCTGGGCCAGGGTTCATTATCTGATGCCAGAGGGCATTCTTCCAATGGAAGAGCAAACTGGAACTGA 3300 0.4248 MRVARAMEKEKEKEKQNERHHAKTLICALNLLSRDLPLPPHILNSVSSIYRNHVTSSLFFFSLSLSFRQSCVSYVATRLLSVQNVDFLFGSVVHVFSSILCYSLPSRTLLVSFASRLFDDGGNSGEDLILDLEDALSKQRPNCVSGFKLEKARESRYRSQIQHRLNDLQELPSSRGEDLQTKCLLELYGLKLAELQMKVRTDVSSEYWLNAKCAYPDRQLFDWGMMRLRRPLYGVGDPFAMDADDQLRKKREAEAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDKKYSDGIEPLEDSEADLPESEKNGISKESPTDEDIDTIDSDHNGDSSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMENKGVTGPHLIVAPKAVLPNWVNEFTTWVPSITAILYDGRLDERKAMKEELSGEGKFNVLLTHYDLIMRDKAFLKKIQWKYLIVDEGHRLKNHESALARTLDNGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGEYDMYKRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKYLRLDGSTKTEERGNLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYSPINKDDKSKDFNNAVTGKRKRKEVVYADTLSDLQWMKAVENGEDISKFSAKGKRRDHHSSDSIAQASDNTVAEESLELRTESVPMANDRTSEDSFHVTPSSKRFKSEGTNFLKHTYEDVGSGLNHHVLSWNTHKKKRSSFLGQGSLSDARGHSSNGRANWN 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03243 1099 Pfam SNF2-related domain 400 688 IPR000330 GO:0005524|GO:0140658
Vimu3g03243 1099 MobiDBLite consensus disorder prediction 318 368 - -
Vimu3g03243 1099 Pfam Helicase conserved C-terminal domain 708 821 IPR001650 -
Vimu3g03243 1099 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 624 875 IPR027417 -
Vimu3g03243 1099 MobiDBLite consensus disorder prediction 987 1014 - -
Vimu3g03243 1099 FunFam Probable ATP-dependent DNA helicase CHR12 628 927 - -
Vimu3g03243 1099 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 711 878 IPR001650 -
Vimu3g03243 1099 Pfam Snf2-ATP coupling, chromatin remodelling complex 915 974 IPR029295 GO:0042393
Vimu3g03243 1099 CDD SF2_C_SNF 697 832 - -
Vimu3g03243 1099 SMART helicmild6 737 821 IPR001650 -
Vimu3g03243 1099 MobiDBLite consensus disorder prediction 334 366 - -
Vimu3g03243 1099 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 373 622 IPR027417 -
Vimu3g03243 1099 MobiDBLite consensus disorder prediction 1079 1099 - -
Vimu3g03243 1099 Coils Coil 912 932 - -
Vimu3g03243 1099 SMART SnAC_2 914 974 IPR029295 GO:0042393
Vimu3g03243 1099 FunFam Chromatin structure-remodeling complex protein SYD 388 631 - -
Vimu3g03243 1099 Coils Coil 3 23 - -
Vimu3g03243 1099 Gene3D - 366 621 IPR038718 -
Vimu3g03243 1099 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 409 575 IPR014001 -
Vimu3g03243 1099 Gene3D - 628 929 IPR027417 -
Vimu3g03243 1099 PANTHER SNF2/RAD54 HELICASE FAMILY 242 996 - -
Vimu3g03243 1099 SMART ultradead3 393 586 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03243 Vimu-Chr3 46139762 46150087 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03243 379 848 RAD5 or RAD16-like Gene Family AT1G02670 27.224 1.25e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu3g03243 SNF2_N 2.4e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03243 - - gmx:100786280 1835.85