Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03240 ATGGCTTCCACCACCACCAATGTCAATGCCAAACAAATCGTTACAGAGATACCCGAGTGGGTTCGCGTCTTCAGTGATGGCACCGTTGAACGGCCGCGCGATTTTCCGATTGTGCCACCGACGCTGCACAACTCTAACACAGGAGTGTCGTCCAAGGACATTGCAATCTCAAACAAACCTCCAAAACCAATTTCGGCACGAATTTACCTCCCAAACATCTCCAACTCCCAGACTGAGAAGCTTCCCATCTACGTCTACTTTCACGGGGGTGGCTTCTTCTTCGAATCCGCCTTCTCCAAACTCTACGACGTCCATCTGCTGAAGTTGGTTTCTGAGGTAAAAGTTATGGTAGTTTCCGTGGAGTACAGACTGGCCCCAGAACACCCTCTCCCTGCAGGTTATGATGATTGTTGGGAGGCTCTCAAATGGGTTGCATCACATTCTGACTCTACCAAATACCTCACACAGAACACTGAGCCATGGCTCATTCACCATGGTGACTTCGACAGAGTATTCATAGGAGGAGACAGTGCAGGTGCCAATATAGTCCACAACATTCTTGCCTTTCGTATTGGGCATCAGCCCTTGCCTGGAGACGTTAAAATACTGGGCGCTGTTCTGGCCCATCCTTACTTTTATGGCTCACAGCCCGTTGGGTCTGAGCCTGTTACCGGAATTGAGCAGAACTTCTACAATCTTGTTTGGAAGTTGGCGTACCCATCTGCAGCAGGTGGGATCGATAATCCCTTGATTAACCCTTTGGCTCCTGATGCTCCCAGTCTGGCTCAACTTGCTTGTTCTAAAATCTTCATCTGCGTTGCTGAAAAGGACGGTTTGTGCGACAGAGGAGTTTGGTACTATGAGGCTGTGAAGAAAAGTGGTTGGCAAGGTCAAATTCAATTCTTTCGTCAGGAAAATGAGGATCATGTTTACCATCTCCTCCAACCAGCCCTCGATCAAGACTCTCCTAACGCTTACAAATTGATCAAACTCATCGCTTCTTTTCTAGTCAATAATTAG 1020 0.4794 MASTTTNVNAKQIVTEIPEWVRVFSDGTVERPRDFPIVPPTLHNSNTGVSSKDIAISNKPPKPISARIYLPNISNSQTEKLPIYVYFHGGGFFFESAFSKLYDVHLLKLVSEVKVMVVSVEYRLAPEHPLPAGYDDCWEALKWVASHSDSTKYLTQNTEPWLIHHGDFDRVFIGGDSAGANIVHNILAFRIGHQPLPGDVKILGAVLAHPYFYGSQPVGSEPVTGIEQNFYNLVWKLAYPSAAGGIDNPLINPLAPDAPSLAQLACSKIFICVAEKDGLCDRGVWYYEAVKKSGWQGQIQFFRQENEDHVYHLLQPALDQDSPNAYKLIKLIASFLVNN 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03240 339 Gene3D alpha/beta hydrolase 5 337 IPR029058 -
Vimu3g03240 339 PANTHER ARYLACETAMIDE DEACETYLASE 16 315 - -
Vimu3g03240 339 SUPERFAMILY alpha/beta-Hydrolases 12 336 IPR029058 -
Vimu3g03240 339 Pfam alpha/beta hydrolase fold 85 312 IPR013094 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03240 Vimu-Chr3 46127346 46128365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03240 22 336 Carbohydrate Esterase AT1G19190 41.066 1.25e-73 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03240 - K13258 vum:124847336 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03240 3 46127346 46128365 Vimu3g03240 3 46127346 46128365 ECH
Vimu3g03240 3 46127346 46128365 Vimu7g02223 7 19482490 19483569 PCT