Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03212 ATGAATGGTGCTGCATGTGTTGATGCAGAGTGCTGTGAGTTTGTGGAAGTTGATCCTACAGGAAGATATGGAAGATACAATGAAATTCTTGGCAAAGGAGCTTCCAAGACAGTCTATAGAGCATTTGATGAGTATGAAGGGATAGAAGTAGCATGGAATCAAGTAAAGGTTTATGACTTTTTGCAGAATCCTGAAGATCTTGAGAGGTTATACAGTGAAATCCATCTTCTCAAGACATTGAAACACAAGAACATCATGAAGTTCTATACTTCGTGGGTTGATACTGCCAACAGACAGATCAATTTTGTCACTGAGATGTTTACCTCTGGGACTCTAAGACAGTACAGACTTAGGCACAAACGGGTTAACATCAGAGCTGTTAAGCATTGGTGTAGGCAGATTTTGGAAGGGCTTCTGTATCTGCACAGCCATAATCCTCCTGTGATCCACAGAGATCTCAAGTGTGATAACATTTTCATCAATGGCAACCAAGGGGAAGTCAAAATCGGTGATCTTGGCCTTGCTGCGATTCTCCGAAAATCTAATGCTGCCCGTTGTGTTGGCACCCCTGAGTTTATGGCTCCAGAAGTGTATGAAGAGGATTACAATGAGTTGGTTGACATATACTCTTTTGGAATGTGCATCTTAGAGATGGTCACTTTTGAATATCCTTATAGTGAATGCAACCATCCTGCTCAAATTTACAAGAAAGTTGTATCTGGGAAGAAGCCAGAAGCTCTTTACAAAGTAGACAATCCAGAGGTAAGACAGTTTGTAGAGAAATGCTTAGCAACCGCGTCTCTCAGACTTTCAGCTAAGGAACTCTTGGAGGATCCTTTTCTGCAAATTGATGATTTTGGATTTGACTCAAAAGTATTCCAGTATCAAAGAGATTGCTATGAAGTGGCCCCATTAATCAGACAGCCTTTGAATGGAACGTATAGCATCAACACCTCAATGAGTGGGTACACTGATAATCTTGGTGGTTATGGGCCCTTCTCTGAATTGGATTATCATCAAAACGATTTCGAAACAAGGGAAATCGGTCTCTTTGATTGTGAAGATGATGACAATTTGGCTAAGGTTGACACCAGAATCAAAAGTGGGAGAAGAGAAGATGATGGCATCTTTTTGAGACTCAGAATTGCAGATAATGAAGGTCGAATTCGAAACATCTACTTCCCATTCGACATTGAGACTGATACTGCATTGAGCGTTGCAAATGAAATGGTAACTGAGCTTGACATAACCGATCAAGATGTAGCAGATTTGGCAAATATGATAGACAATGAAATTGCAACACTGGTTCCCGAGTGGAGAACAGGAGCCAGAATAGAGGAAAATTCAGAATGTTCAGGTGCAGGTGTCTGCCTCAATTGTGCTGCAAACGGCTACTTGGTTGATTATGTATCATCAAATAATCCATGTGGCAAGAATCTTCAATTCCTTCATTGTTCTAAAAATGGATGTGCTGCAATTCATGGCCGATTTGAGGAGATAACATACCAAGTTGAAGGGTCTGCAAGTAGTGATGCCGAAGGTGCACGGGATGCATCAAGCCATTCCGACGGCATTCATTATACAGATATTTGGGCCCAGAGAGATGAACCAGAGTTATGCCATGAAGAGTTAAAAGACATACATTGTGACCAAACTCATGAGGCGTCAAACACGTTGAACATCAAGGAGGAAGGAAAAGCTGTTAATGTGGATGAAGAAAGTGATCTAAATACCAAAAGGCCTCATTCAAACCCTGCAATAAATTGTGTTATGTTGGATTGTGAAAATGAAATCAGGCAAGAGCTAAGATGGCTCAAAGCAAAGTACCAGATGCAGTTAAGGGAGCTTAGAGATCAACAACTGGGGGTTAAGCCAAAATTTACTTGCATGTCTCCTGATACGAAAAAATTAAATTATGGGAAAGATGGAATTCAGAGTTTATCAGCTCAATCCAGATTGAAGATACAAAAGCATAAACCACAATTAAGATCTATAGTTTCTGGGAAGCATTTTCCTCTTGAAGACGAGAAATGCAACAATTATGCTGATCAAATGGTTCAAAATGTTGAGGAGATTGATCAGTCTAACAGTCCTGAGCGAATGCTCACAGACAAGGATTTCTTTACAGGAGCTTTGTTTCCAAACTCCCTTCAGAGGGCAACCTCCCTTCCCGTTGATGCAATAGATTTCTAG 2193 0.4067 MNGAACVDAECCEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKVYDFLQNPEDLERLYSEIHLLKTLKHKNIMKFYTSWVDTANRQINFVTEMFTSGTLRQYRLRHKRVNIRAVKHWCRQILEGLLYLHSHNPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSNAARCVGTPEFMAPEVYEEDYNELVDIYSFGMCILEMVTFEYPYSECNHPAQIYKKVVSGKKPEALYKVDNPEVRQFVEKCLATASLRLSAKELLEDPFLQIDDFGFDSKVFQYQRDCYEVAPLIRQPLNGTYSINTSMSGYTDNLGGYGPFSELDYHQNDFETREIGLFDCEDDDNLAKVDTRIKSGRREDDGIFLRLRIADNEGRIRNIYFPFDIETDTALSVANEMVTELDITDQDVADLANMIDNEIATLVPEWRTGARIEENSECSGAGVCLNCAANGYLVDYVSSNNPCGKNLQFLHCSKNGCAAIHGRFEEITYQVEGSASSDAEGARDASSHSDGIHYTDIWAQRDEPELCHEELKDIHCDQTHEASNTLNIKEEGKAVNVDEESDLNTKRPHSNPAINCVMLDCENEIRQELRWLKAKYQMQLRELRDQQLGVKPKFTCMSPDTKKLNYGKDGIQSLSAQSRLKIQKHKPQLRSIVSGKHFPLEDEKCNNYADQMVQNVEEIDQSNSPERMLTDKDFFTGALFPNSLQRATSLPVDAIDF 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03212 730 FunFam Probable serine/threonine-protein kinase WNK1 8 105 - -
Vimu3g03212 730 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 638 - -
Vimu3g03212 730 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03212 730 FunFam probable serine/threonine-protein kinase WNK9 107 286 - -
Vimu3g03212 730 MobiDBLite consensus disorder prediction 562 581 - -
Vimu3g03212 730 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03212 730 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Vimu3g03212 730 CDD STKc_WNK 22 281 - -
Vimu3g03212 730 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Vimu3g03212 730 Gene3D Phosphorylase Kinase; domain 1 9 105 - -
Vimu3g03212 730 MobiDBLite consensus disorder prediction 562 579 - -
Vimu3g03212 730 Gene3D - 375 465 - -
Vimu3g03212 730 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 378 432 IPR024678 GO:0004674|GO:0005524
Vimu3g03212 730 FunFam probable serine/threonine-protein kinase WNK9 374 458 - -
Vimu3g03212 730 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03212 730 Coils Coil 599 619 - -
Vimu3g03212 730 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03212 Vimu-Chr3 45856778 45859770 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03212 1 513 MAP Kinase Kinase Kinase AT3G22420 58.076 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vimu3g03212 Pkinase 1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03212 K08867 - gmx:100804179 1281.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03212 3 45856778 45859770 Vimu3g03212 3 45856778 45859770 ECH