Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03181 ATGTTCTCTTCCACATATGACTCCAACCTTTTTCCAAACTTCCCTTCTTCTTCTTACCCTATACTTCCTTTTCTCATTGATCCTGAAAATGATTTTGCAAGCAACACCCTTTTTGATGACCCTCTTCTTGTTCCCTTCACACCCATCACCCATGATCCTCCATTTCCTGAAGAGACTGTTGCTAATTTTGCAGTTTCTGACTGCACTGCCATTCTTGAACAAGATGCAAACACTAACTATGGTTCCCACAATGGTAGCATGTCCAATTTTCTGACCCAGAAACCAGCCATAGCAAAGAAAGACAGGCACAGTAAGATTCATACATCTCAGGGTTTGAGGGACCGTAGGGTCAGATTATCAAGCGAAATAGCTCGCAAGTTCTTTGATCTTCAGGACATGTTAGAGTTTGACAAACCAAGTAACACACTTGAGTGGCTTTTCACAAAGTCTGAGAATGCGATCAAAGAACTAGCCCAAAGTAAGCATAGCGGCAGTATTAGTGGGGGTGACAAGTGTTCTGGCGACGCTTCTGTGGATTCAAATAACAACAAATCATTGGCGGGTAGTGGGGTTGATGGTTCCAAAGGGAGGAAGTCAAAATCTGCACAGAAGGATGATGCTTGTGTTCAGACCAAAAAGGAGTCAAGGGAAAGGGCAAGAGCAAGAGCAAGAGAGAGGACTTGCTACAAAATGTGTAGCACTAGAAGGGTGCAGCAAGACTTTGATGAAAGGTGCCCTGTAACTGCAAACACTCAAATGCTGCACCAATTGAGGTCATCCATTCTGCCTGAACCTGAAGCTTACGCGAGATGGGTTCAGCCTTATAACCCTTTTCTCATTCATAATGAAGCACCCAGAGATGGATTTGACGTCATTGAAGAATCTATTATGATTAAAAGGAATATGAAGCCGTCAACTATGATGGCTTCTCATCACCAAAACCAAAACCAAAACCAAAACCAAAGCCAAAACCTTGTGATCCCTAGGGAT 990 0.4313 MFSSTYDSNLFPNFPSSSYPILPFLIDPENDFASNTLFDDPLLVPFTPITHDPPFPEETVANFAVSDCTAILEQDANTNYGSHNGSMSNFLTQKPAIAKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSENAIKELAQSKHSGSISGGDKCSGDASVDSNNNKSLAGSGVDGSKGRKSKSAQKDDACVQTKKESRERARARARERTCYKMCSTRRVQQDFDERCPVTANTQMLHQLRSSILPEPEAYARWVQPYNPFLIHNEAPRDGFDVIEESIMIKRNMKPSTMMASHHQNQNQNQNQSQNLVIPRD 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03181 330 Pfam TCP family transcription factor 98 233 IPR017887 -
Vimu3g03181 330 ProSiteProfiles TCP domain profile. 99 157 IPR017887 -
Vimu3g03181 330 MobiDBLite consensus disorder prediction 197 221 - -
Vimu3g03181 330 MobiDBLite consensus disorder prediction 174 189 - -
Vimu3g03181 330 MobiDBLite consensus disorder prediction 306 330 - -
Vimu3g03181 330 MobiDBLite consensus disorder prediction 159 221 - -
Vimu3g03181 330 ProSiteProfiles R domain profile. 213 230 IPR017888 -
Vimu3g03181 330 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 91 318 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03181 Vimu-Chr3 45616022 45617040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03181 97 232 TCP Transcription Factor Family AT1G67260 44.079 2.67e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vimu3g03181 TCP 2.9e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03181 - - aprc:113871835 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03181 3 45616022 45617040 Vimu8g01927 8 24901036 24903232 PCT