Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03177 ATGAATTCAGAAAGCGCGGTTTCGCCTAAGATGGAATTGGAATCTGGAGTTTTGAATTCAAATATCAGTAGTGAAAATCTTAGCAGCAAAAATATGATATTTAGGGCTAATAAAATTGATAAAATTGATTTGAAGAGGATGGATGCCATGCTAGAAAAACACTTGAACAGGCTTTTTTCCGAAAGCGTTGCAACAAAAAGGCCAAAAGAAGCATGGGATATTGATACAGCCAAATTGGATTTACTTTATTCTGTATCTAAAGAGACTTATGGTGGTACTGTCTACAGGGGTACTTATGATGGTCAAGATGTTGCAGTGAAAGTCTTGGACTGGGGTGAAGATGGTGTTACCCCTGCGGTTAAAATTGCTTCTTTAAGGTCATCATTTTGGCAGGAAGTCACCGTATGGCAAAAGCTTGATCATCCAAATATCACAAAATTTATTGGAGCTTCACTGGACACTTCAAATATTCCTTTACCAACCAGTTATCCAAATTCTATTCCTTCCAAGACGTGTTGTATAGTTGCCGAGTTTCTTCCTGGCGGAACATTGAAACAATACCTGTCCAGAAATAGACAGAACAAACTTCCATACGAGGTTGTGATCAAGCTGGCTTTGGACCTTTCTAGAGGCTGTAATATGCCGTTTTCTAAGCTCAGCCTTGCTACTGTGTCATGTGCCCTTATTAATAAGCATTTACGACCTAGTATTCCAAGAAATTGTCCAAGTGCCTTAGCAAACATCATACAGAAATGCTGGGATCCAAAACCAGAGAGGCGACCAGAAATGCGTGAGGTGATGACAATGTTGGAAGCAATTGACACAAACAAGGGAAGTAGAATGATACGAAAGGATAAAAATCCACTTTCTTTGTGTTTTTTACCTTCTGCTCGTTCTTAG 900 0.3922 MNSESAVSPKMELESGVLNSNISSENLSSKNMIFRANKIDKIDLKRMDAMLEKHLNRLFSESVATKRPKEAWDIDTAKLDLLYSVSKETYGGTVYRGTYDGQDVAVKVLDWGEDGVTPAVKIASLRSSFWQEVTVWQKLDHPNITKFIGASLDTSNIPLPTSYPNSIPSKTCCIVAEFLPGGTLKQYLSRNRQNKLPYEVVIKLALDLSRGCNMPFSKLSLATVSCALINKHLRPSIPRNCPSALANIIQKCWDPKPERRPEMREVMTMLEAIDTNKGSRMIRKDKNPLSLCFLPSARS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03177 299 SUPERFAMILY Protein kinase-like (PK-like) 91 276 IPR011009 -
Vimu3g03177 299 Pfam Protein tyrosine and serine/threonine kinase 92 213 IPR001245 GO:0004672|GO:0006468
Vimu3g03177 299 Gene3D Transferase(Phosphotransferase) domain 1 74 213 - -
Vimu3g03177 299 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 227 277 - -
Vimu3g03177 299 Gene3D Transferase(Phosphotransferase) domain 1 214 289 - -
Vimu3g03177 299 ProSiteProfiles Protein kinase domain profile. 79 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03177 Vimu-Chr3 45562072 45563789 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03177 212 294 MAP Kinase Kinase Kinase AT3G22750 53.012 2.95e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vimu3g03177 PK_Tyr_Ser-Thr 4.8e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03177 - - gmx:100807899 293.508