Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03176 ATGCTTGGTGGTGATATGCAGGATTCTCCTGTATTTAACTATATCAGTAATCTATCTCCTATAGAGCCTGTTAAGTCTGTTCACATTACCCAAACCTTCAATTCGCTTAGCTTCTCATCCCCTCCATCTGTTTTCACATCACCTCATGTCACTTGCCACAGAGAATCCAGATTCCTCAGGAGGCATAACCTTTTAGATGCATCCAAAGTTAAGGCTTCATCTGAAGATATAAACAATGTTTATTCATGTGAAAAGACTCCCGCAGATTCAACTCAACCATGTCATGAATCAAGTGAGCCACAAGAAAATACCAATCCAAATATTTCCATAAGAGATGCCTCAATCGAGCCACATGATGAAAACCCAAATATCTCAATTGAGGTCCCACAAGGCTTGAAATATAATTTGGCTAGCCCAGGATATGAACCTGTGATCTGTGCTGATGAGGCTGACTCTCTTTTGGAACTGCCGGGCAAACCAGGATCAGATGTTGCTTATGTTCCAGATGACTCTGAAAATGATTCAATTGAGGGTGAAATGCATCTTCCAGCTTTATGTCAAAATGAGGAAAAAACTGAAGGACCAAATTGTGGTGTGGATGATTTAATTAATGAAGCCTCTGATCTGTTAATGTTTAGTCCCCCAAATATGACAGAAGCTTTTAAGGATATAAATAAACAATTAAATCCTTCAACAAAGCTTACTAATTTGAGGACTTTGTTACGAAAATCTGCTACCAATGATGGTCAACAAATGCACATTGTTGATACAGTTGCTTCTGGTTCTGAACATGAAATTGAAAATCATCCTTGTGAATCAGGAGCAGCCACAGACACAGTTCAGAGCCAAGACAAACATAACAATGTTGCTTTGGTGGCTAACAATCCCATTGAGAAAGTGGATGATAAGCTTGTTTACGTGACACACCGTGGTATACGGAGACGCTGTTTAGATTTTGAGATGGCCAGTGTCCAAAGGAAGAACCTAGATGGTAAATCAAACACCAATTCCAGTAAAGAAAAATCTGAGGAGATGGATGTTAGTAAAGGAAAGCAACTGCTTCCCATTAAACATAGTGGGGATTCACGGAAGTGTGTTTTGCCTGGAATTGGTTTGCACTTGAATGCCCTTGCTAGCTTAAATGATTGCAAAAACATAAAAATTGAGACACTGCTATCTGGAAGGCAACCTAACCTTCCCAGCTCCTCCTCATCCTTGCAACTTTCTGCAAGCCAAGATCATCAACTATCATTGGTACCTACATCAGTGGAAAAAGATTTGGAGCAATCAGAGAATGAAGTTCAGCCTGGTGAAGATTGTACCCAGGCTTTGGTTCACATGCCTGGTGAAGATTGTACCCAGGCTTTGGTTCACATGCCTGGTGAAGATTTCCAGCAGAATAGTCCAAAAAAGAAAAGGCAAATCTACAGGCGCAGGTTAGAACCAGATGGGGAAGGGGAGTCTTGCAAGCGTTGTAATTGTAAGAAATCAAAGTGTTTGAAGCTTTATTGTGAGTGCTTTGCTGCTGGAGTCTACTGCATAGAGCCCTGTTCATGTCGTGATTGCTTTAACAAACCTATTCATGTTGATACCGTCCTTCAAACTCGCCAGCAGATTGAGTCTCGAAATCCACTTGCTTTTGCTCCTAAAGTCATACGGGGTTCTGATTCTGTACCTGAAATTGGGGATGACCCTAACAAAACTCCAGCTTCAGCCCGACACAAAAGAGGATGTAATTGCAAGAAATCAAGTTGCCTAAAGAAATACTGTGAATGTTATCAGGGTGGTGTTGGTTGCTCCATAAGCTGCAGATGTGAAGGATGCAAGAACACCTATGGTAGAAAGGATGGTTCTGTTCATTCTGGAATAGAAGCCAAGCCCGAGGAAGAAACAGAAGCATGTGAAAAGGGTGTGATGGAAAATGCTTCACATAAAACTGAAACACAAAATACTGAAGACCATCCTGATCATGCTCTTCCTACAACACCATTACGTCTTTCCAGATCATTGATCCCGTTACCCTTTTCATCAAAGGGTAAGCCACCAAGATCTTTTGTTACCACCATCTCCAGTTCTGGATTGTTTGTCAGCCAAAAGCTCGGGAAATCAAGTGCGCCGCGCTCTCAACCTAAATTTGAAATGCCTTTGCAAACAGTTCCGGGTGATGACTCTCCTGTCACCTGCATCAAAACATCTTCTCCAAATGGCAAGAGGATCTCCTCTCCTAATTGTGACGTGGGATCATCTCCTACTCGCAGAGGTGGGAGGAAGTTGATCTTACAATCTATCCCTTCATTTCCTTCTCTCACCCCTCACAATCTTCGGAGTGACTGA 2334 0.4195 MLGGDMQDSPVFNYISNLSPIEPVKSVHITQTFNSLSFSSPPSVFTSPHVTCHRESRFLRRHNLLDASKVKASSEDINNVYSCEKTPADSTQPCHESSEPQENTNPNISIRDASIEPHDENPNISIEVPQGLKYNLASPGYEPVICADEADSLLELPGKPGSDVAYVPDDSENDSIEGEMHLPALCQNEEKTEGPNCGVDDLINEASDLLMFSPPNMTEAFKDINKQLNPSTKLTNLRTLLRKSATNDGQQMHIVDTVASGSEHEIENHPCESGAATDTVQSQDKHNNVALVANNPIEKVDDKLVYVTHRGIRRRCLDFEMASVQRKNLDGKSNTNSSKEKSEEMDVSKGKQLLPIKHSGDSRKCVLPGIGLHLNALASLNDCKNIKIETLLSGRQPNLPSSSSSLQLSASQDHQLSLVPTSVEKDLEQSENEVQPGEDCTQALVHMPGEDCTQALVHMPGEDFQQNSPKKKRQIYRRRLEPDGEGESCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCRDCFNKPIHVDTVLQTRQQIESRNPLAFAPKVIRGSDSVPEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNTYGRKDGSVHSGIEAKPEEETEACEKGVMENASHKTETQNTEDHPDHALPTTPLRLSRSLIPLPFSSKGKPPRSFVTTISSSGLFVSQKLGKSSAPRSQPKFEMPLQTVPGDDSPVTCIKTSSPNGKRISSPNCDVGSSPTRRGGRKLILQSIPSFPSLTPHNLRSD 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03176 777 MobiDBLite consensus disorder prediction 83 125 - -
Vimu3g03176 777 MobiDBLite consensus disorder prediction 697 777 - -
Vimu3g03176 777 MobiDBLite consensus disorder prediction 328 352 - -
Vimu3g03176 777 MobiDBLite consensus disorder prediction 640 654 - -
Vimu3g03176 777 ProSiteProfiles CRC domain profile. 488 613 IPR005172 -
Vimu3g03176 777 SMART CXC_2 573 614 IPR033467 -
Vimu3g03176 777 SMART CXC_2 487 528 IPR033467 -
Vimu3g03176 777 MobiDBLite consensus disorder prediction 640 662 - -
Vimu3g03176 777 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 490 525 IPR005172 -
Vimu3g03176 777 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 576 611 IPR005172 -
Vimu3g03176 777 MobiDBLite consensus disorder prediction 724 748 - -
Vimu3g03176 777 MobiDBLite consensus disorder prediction 763 777 - -
Vimu3g03176 777 MobiDBLite consensus disorder prediction 395 415 - -
Vimu3g03176 777 MobiDBLite consensus disorder prediction 333 351 - -
Vimu3g03176 777 MobiDBLite consensus disorder prediction 83 111 - -
Vimu3g03176 777 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 6 772 IPR044522 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03176 Vimu-Chr3 45540094 45544971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03176 6 773 CPP Transcription Factor Family AT4G14770 43.671 2.14e-152 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vimu3g03176 TCR 2.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03176 - - var:108326442 1437.17