Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03173 ATGGCCTCTCATTCTCCCAAGAGAAAAGGTCTTTATCTTAATGCAATATCGCAGGTCTTCCTCCTCCTAATTCTCATCTCCTTCATCAACCCTTCATACCAAGACCCTTTTTCACCTCTTCCCCCTCTAAACCCAAGGCTCTCCATAGCCTACACAGCACTCCAAGCATGGAAACACAAAATCACATCAGACCCCAAAAACTTTACCTTAAACTGGTGTGGCCCCAATGTTTGCAACTACACAGGCATATACTGTGCACCTGCCCCAGATGATCCTCACATCTACACTGTTGCTGGAGTTGACCTAAACCATGCCTCCATATCTGGTTCATTGCCAGAAGAACTTGGCCTCTTAACTGACCTATCACTTTTCCACATAAACTCCAACCGCTTCTGTGGTTCCCTCCCCAACAGCTTCGACCACCTAAATCTCCTCCATGAACTAGACATAAGCAACAACCAATTCTCAGGACCCTTCCCCGATGTTCTTCTCTGCATCTCCTCGTTAAAATACTTAGACATCAGATTCAATAACTTCTACGGCAACATTCCCTCCCGCCTCTTCGATCTCAAACTCGATGCCCTTTTCATCAACAACAACAACTTCAAATTCTCCCTGCCTGAGACCTTCGGCAACAGTCCTGCTTCTGTTGTTGTCTTTGCAAACAATGACCTCAAGGGGTGTCTCCCTTCGAGTTTGGCCAAAATGAACGGTACCCTTAACGAGATTATCATCACCAACAGTGGCTTAACGGGCTGTTTGCCTAGTGAGATAGGGGATTTGGACAAAGTGACAGTGTTTGATGTGAGCTTCAACAAGCTTGTTGGAGATTTGCCCCAGTCCTTGGGGAAAATGAAGAGGTTGGAGCAGTTGAATGTGGCGCATAACATGCTTTCTGGTACCATTCCTGAGAGTGTGTGCATGTTGCCGAGGTTGGAGAATTTCACGTACTCGTACAACTACTTCTGCAGTGAGTCACCGGTGTGTCTCAAGTTGAAGGATAAGGATGATACCAAGAACTGCATTCCTTATAGGCCATTGCAAAGGTCACCTGATGAGTGTGCAGCTTTCTACGAATATCCTGTTCATTGCAGTGCCTTTGGTTGTGTATCTCCGCCGCCGCCGCCACCTCCTCCTCCACCACCACCTCCTCCGCCGCCTCCACCACCGGAAAAATACCACCACTATCCCTGA 1194 0.4757 MASHSPKRKGLYLNAISQVFLLLILISFINPSYQDPFSPLPPLNPRLSIAYTALQAWKHKITSDPKNFTLNWCGPNVCNYTGIYCAPAPDDPHIYTVAGVDLNHASISGSLPEELGLLTDLSLFHINSNRFCGSLPNSFDHLNLLHELDISNNQFSGPFPDVLLCISSLKYLDIRFNNFYGNIPSRLFDLKLDALFINNNNFKFSLPETFGNSPASVVVFANNDLKGCLPSSLAKMNGTLNEIIITNSGLTGCLPSEIGDLDKVTVFDVSFNKLVGDLPQSLGKMKRLEQLNVAHNMLSGTIPESVCMLPRLENFTYSYNYFCSESPVCLKLKDKDDTKNCIPYRPLQRSPDECAAFYEYPVHCSAFGCVSPPPPPPPPPPPPPPPPPPPEKYHHYP 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03173 397 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 38 391 - -
Vimu3g03173 397 Gene3D Ribonuclease Inhibitor 50 215 IPR032675 -
Vimu3g03173 397 Gene3D Ribonuclease Inhibitor 216 339 IPR032675 -
Vimu3g03173 397 Pfam Leucine rich repeat N-terminal domain 52 85 IPR013210 -
Vimu3g03173 397 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 230 326 - -
Vimu3g03173 397 FunFam Leucine-rich repeat extensin-like protein 1 51 212 - -
Vimu3g03173 397 MobiDBLite consensus disorder prediction 373 397 - -
Vimu3g03173 397 SUPERFAMILY L domain-like 52 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03173 Vimu-Chr3 45492419 45494692 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03173 13 377 Leucine-rich Repeat extension Gene Families AT3G22800 62.973 2.35e-160 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03173 - - gmx:100813811 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03173 3 45492419 45494692 Vimu3g03173 3 45492419 45494692 ECH