Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03171 ATGGGGAAGACAGGCAAATGGCTTAGAAACTTGTTGACCGGTAAGAAAGACAAGGAAAGGGAGAAGGAAAAATCTACATCTAACCTGAATTTTGCTTCAAATGGAGCAGACAACTCAGCCACTCCAACTTCCACAACCCCAAAGGAGAAAAAGAGATGGAGTTTCAGAAGATCATCAGCCACTTCCACAGCGACACTAGCATCAGTTTCCAAGGAATTGAATTTTGTAGAACCAACTGTCACTGCTTCACAGACAGTGCAAGCTGACACTGATGATCAGAATGAGCAAAGGAAGCATGCCATGGCTGTGGCTGCTGCCACCGCAGCAGCAGCTGATGCTGCGGTGGCAGCTGCTGAGGCTGTTGCTGCTGTGATCCGTTTGACTTCTGCTTCCAATGCAACATCCAAAAGCATTAAAGAGGCTGCTGCCATTAAAATCCAATCAGTCTTTCGGTCTCATTTGGCAAGGAAAGCATTGTGCGCTCTAAGAGGACTGGTGAAGTTGCAGGCACTGGTAAGGGGTCATTTGGTGAGAAAACAGGCCAAGGAAACACTGAGATGCATGCAGGCTTTGGTGACGGCACAAGCTAGAGCTCGTATTCAGAGGATCCGAATGGGTTCAGAAGGAATTCCTAATCAACAACAAAGAAAAGCCATAGATGATGATTTGTTCAGGCAAATATATAATGAAATGGAGAGAGGCTTGGAAGACAATATCAAGATTGTTGAGATGGATGTGGGTGAAACGAAAAGTGATTGCAGAAGTAGAAGCAACAGTGTATATCATTATTCTGAACAGCATGACCATAGATTTTCCACACATTATTCAACAAATGGTTCCTACTCAAAGGAAGAAAATTACAAGGTGTCACCAGCTCCATCAGCATTGACAGAGTTGAGCCCAAGAGAATGCAGTGGCCATTTTGAGGACTGTTTCAGCACAGCCCAAAGCAGCCCTCAGTTCCACTCTGCTGTGTCAAGAACAGAAAATTCAAAGCACCCTTTTTCTTTTCCAAGGCCAGCTTATGCAGAGTCTATGTGCCATGACTACCCTCTGTTTCCAAATTACATGGCTAACACTGAATCATCAAGGGCCAAAGTCAGATCGCATAGTGCACCGAAACAAAGACCTGATTCATTTGAGAGGCAACCAAGCCGCCGAAGAGCTTCAGTAGAGGGAAGAAATGTCCCAAGGCCAATTAGGATGCAAAGGTCATCTTCACATTTGAGTGCCACTGCTCAAAACTATCAATATCCTTGGTCGATCAAGCTTGACAGATCCGCGGTTTCACTCAAAGACAGCGAGTGTGGCTCTACAAGTACAGTGCTCACTAACACTAATTATTGCAGATCTCTTGTTGCATTTGACCCACGTGGAGATAGTAGAGTTGTTGTGAGAGATTTATTGCTGTCCAATGGTTGTAGAGTTTCTGCTTCTATCCATTGTGTGCCATGTATGTGGATTACTTTGTAG 1473 0.4467 MGKTGKWLRNLLTGKKDKEREKEKSTSNLNFASNGADNSATPTSTTPKEKKRWSFRRSSATSTATLASVSKELNFVEPTVTASQTVQADTDDQNEQRKHAMAVAAATAAAADAAVAAAEAVAAVIRLTSASNATSKSIKEAAAIKIQSVFRSHLARKALCALRGLVKLQALVRGHLVRKQAKETLRCMQALVTAQARARIQRIRMGSEGIPNQQQRKAIDDDLFRQIYNEMERGLEDNIKIVEMDVGETKSDCRSRSNSVYHYSEQHDHRFSTHYSTNGSYSKEENYKVSPAPSALTELSPRECSGHFEDCFSTAQSSPQFHSAVSRTENSKHPFSFPRPAYAESMCHDYPLFPNYMANTESSRAKVRSHSAPKQRPDSFERQPSRRRASVEGRNVPRPIRMQRSSSHLSATAQNYQYPWSIKLDRSAVSLKDSECGSTSTVLTNTNYCRSLVAFDPRGDSRVVVRDLLLSNGCRVSASIHCVPCMWITL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03171 490 Pfam IQ calmodulin-binding motif 166 182 IPR000048 GO:0005515
Vimu3g03171 490 Pfam IQ calmodulin-binding motif 141 159 IPR000048 GO:0005515
Vimu3g03171 490 MobiDBLite consensus disorder prediction 27 48 - -
Vimu3g03171 490 Gene3D - 137 192 - -
Vimu3g03171 490 ProSiteProfiles IQ motif profile. 139 167 IPR000048 GO:0005515
Vimu3g03171 490 ProSiteProfiles IQ motif profile. 163 190 IPR000048 GO:0005515
Vimu3g03171 490 PANTHER IQ-DOMAIN 5-RELATED 1 392 - -
Vimu3g03171 490 Pfam Protein of unknown function (DUF4005) 332 395 IPR025064 -
Vimu3g03171 490 MobiDBLite consensus disorder prediction 367 394 - -
Vimu3g03171 490 MobiDBLite consensus disorder prediction 1 57 - -
Vimu3g03171 490 MobiDBLite consensus disorder prediction 363 408 - -
Vimu3g03171 490 MobiDBLite consensus disorder prediction 10 26 - -
Vimu3g03171 490 SMART iq_5 138 160 IPR000048 GO:0005515
Vimu3g03171 490 SMART iq_5 161 182 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03171 Vimu-Chr3 45480509 45482998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03171 1 452 IQD Protein Family AT4G14750 45.263 5.08e-99 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03171 - - gmx:100817667 704.131