Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03170 ATGGCTGGTAGGTTGCCTGGTGTTGGGTTGCTTGCAAGGAAGAGAGCAGAGAGCAATCACAGACATGAAAATCGACACAACTATTACCTAAATGAATCACTCCACTCACCTTCCATTCCTCTCACTGTCTTAGATGAAACTGCTCTCAAGGCCAGACAGAGGCTTCACCACAAGCTTGGACACTTCTTTTCCTCCTACAGATCAGGTGAGAATCCGAGAAAAAAAGGGGGAAAAGTAAGGGAAAACAGTAACCAGAAGAAGGACGGAGGATTAGGTCGGAAGTTATTAGAGAGTTCGTGGTTATTGCGTGGCAACAAGGTTAAGGAAGAGAGAAAAGTGTGTGCCGTTTGCCTTGAAGAGTTGGGGGAAGAGCAACATGTGATGAACCTTTCATGCTCCCACAAGTATCATTCTGCATGTCTTCTTCCATGGCTTGCAGCTCATCCCCACTGTCCTTATTGTCGAACTCCAGTACAACTCTGA 483 0.4617 MAGRLPGVGLLARKRAESNHRHENRHNYYLNESLHSPSIPLTVLDETALKARQRLHHKLGHFFSSYRSGENPRKKGGKVRENSNQKKDGGLGRKLLESSWLLRGNKVKEERKVCAVCLEELGEEQHVMNLSCSHKYHSACLLPWLAAHPHCPYCRTPVQL 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03170 160 SMART ring_2 114 154 IPR001841 -
Vimu3g03170 160 ProSiteProfiles Zinc finger RING-type profile. 114 155 IPR001841 -
Vimu3g03170 160 MobiDBLite consensus disorder prediction 64 91 - -
Vimu3g03170 160 MobiDBLite consensus disorder prediction 71 91 - -
Vimu3g03170 160 Pfam Ring finger domain 113 155 IPR001841 -
Vimu3g03170 160 SUPERFAMILY RING/U-box 113 158 - -
Vimu3g03170 160 CDD RING-H2_PA-TM-RING 113 155 - -
Vimu3g03170 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 159 IPR013083 -
Vimu3g03170 160 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 39 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03170 Vimu-Chr3 45475476 45476445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03170 106 158 C3H Transcription Factor Family AT1G49850 41.509 6.80e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03170 - - gmx:100527548 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g03170 3 45475476 45476445 Vimu3g03170 3 45475476 45476445 ECH