Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03162 ATGATTGTTCCTCAACCGGTTCAGGGGCTTCATGAAACTGGTCCTCCGCCATTCCTAACAAAAACATACGACATTGTTGATGACCCTTCCACTAACCATATAATTTCCTGGAGCAAGGGGAACAATAGCTTCATTGTGTGGGATCCACAGGCCTTTTCCCTCACCCTTATGCCCAGATTCTTCAAGCACAACAATTTCTCCAGTTTTGTCAGGCAACTCAACACCTATGTCAGTAACACCTCTTTCTACTTCCCAATCATCCAATATCATGTATATTTTATTCTTCTTCTTGTTAGCTTTTCTTACTGTGGTCAGATGAAATGTTACTTTCATTATGGATTGCTTCTACATGCAACGATATAA 363 0.405 MIVPQPVQGLHETGPPPFLTKTYDIVDDPSTNHIISWSKGNNSFIVWDPQAFSLTLMPRFFKHNNFSSFVRQLNTYVSNTSFYFPIIQYHVYFILLLVSFSYCGQMKCYFHYGLLLHATI 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03162 120 PRINTS Heat shock factor (HSF) domain signature 18 41 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu3g03162 120 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu3g03162 120 PRINTS Heat shock factor (HSF) domain signature 56 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu3g03162 120 SMART hsfneu3 14 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu3g03162 120 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 4 76 IPR027725 -
Vimu3g03162 120 FunFam Heat stress transcription factor B-4 10 82 - -
Vimu3g03162 120 Gene3D - 10 93 IPR036388 -
Vimu3g03162 120 SUPERFAMILY "Winged helix" DNA-binding domain 14 77 IPR036390 -
Vimu3g03162 120 Pfam HSF-type DNA-binding 18 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03162 Vimu-Chr3 45386363 45386725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g03162 4 76 HSF AT3G22830 83.562 2.16e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu3g03162 HSF_DNA-bind 2.9e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03162 K09419 - gmx:100811941 157.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02310 7 19934941 19939320 Vimu3g03162 3 45386363 45386725 PCT