Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g03157 ATGACAGAATTGACCTTCATATTTAACACCGGAGAAGAGAGCGTCGACGGTGGGAGAAGCATGAGTGAATCAGAGAGAGGGCATGAGAAATGGGAAGAGAGTGAATGCTTCGAGTGCCTCCAACTTCGAATAAAGTCGGATTTCTCGGAACAAGTCTTCTTCAATTATGCCATCTCCAATTCTGCTTTTCCTTTCGGATCCTCAGCTATCGTCAATATTTCTGGTACAACTGATGGAGAAGCTTCGGGCGGTCAATTTATATTGCAATACATGCCGAGTCGTGATAAGAATTGTTTTATCAATTATGTAAATGTATATAGTTTGGACAGTGGTGAAATTACTACTGGGAGTGGTGATCCTGATATTGGTGGAAGTAAAAATAATGTTATTAAGGGTAGAATTACTTCATCAGATGAATCTGACTGTGGCAAAGCTTTTTCTGGAAACACAAATTGTAGTCATTCTGGAAGGTTTTCTTGCTTGAGGACAATCACCTCACTCTTGCCGATTGCTCATGTGGGAAATTCTTCCTATTCTACGTTTCAAAAGGTGTCCTCTGATTTCTTGTCCGGGCTAATCGAAGACCATGTCTTAAATTCACTTTATCTCTTCATTGAAGAGAAAGGATCTGGATGGGACAGTATAAATTTCCTGGGTTTAATTGGGTTGCCATCATTTGAAGAGGATGTTTTGCCAGGCTCTTTGAGGCATCCCAACATAGCTCCAGTCCTTGCAATTTTTGAAACATCCGATCATGTTAATGTGGTGCTTCCAAAAACTCCATACAACTTGGAAAGTATTCTTCATTTTAATCCCAATTCCTTAAAATCTGATTGGAATAGAAGATTTCTTATATATCAACTACTCTCAGCCTTATCGTACGTACATGGTTTAGGGGTTTCTCATGGTAATATATGCCCATCCAATATCATGTTGACTGATTCGTTATGGTGTTGGCTGAGATTATGGAGTGAGCCCGTATTGGAATCTAATTTAACTTCGCAGGAGAGTGAAAGCGTTAATTCTGAACCTGCAAGAATTGGTTGTTGTAATGTTGGTTGTCATTCTCATGGCCTTTATGCTGATCTAAAGCTTTCTCCAACAATAGATTGGCATGCTTGCTTTCAGCAGTGGTGGAGAGGAGAAATAAGTAATTTTGAATATTTACTCATCTTAAACAGATTAGCAGGAAGGAGGTGGGGGGACCATACATTTCATCCAGTAATGCCTTGGGTAATTGATTTTAGCTCAAAACCTGATGATAATTGTGATGTAGGGTGGCGCGACTTGAGCAAGAGTAAATGGCGCTTGGCAAAAGGCGATGAACAATTGGATTTCACATATTCAACATCTGAAATCCCTCATCATGTTTCAGATGAATGTCTGTCTGAATTGGCTGTCTGCAGTTATAAAGCAAGAAGACTGCCTTTGAGTGTTCTGAGAATGGCTGTTCGTTCTGTGTATGAACCTAATGAGTATCCTTCCACAATGCAGAGGCTCTATCAATGGACTCCCGATGAATGCATTCCAGAGTTTTACTGTGATGCTCAAATTTTTATATCAATACATGATGGTATGGCTGATTTGGCTGTACCCTCTTGGGCAGAGAGTCCTGAGAATTTCATTAAATTGCATTTTGATGCATTAGAAAGTGATAGAGTGTCATTTCAGCTCCATCATTGGATAGATATAACCTTTGGTTACAAAATGTCTGGCCAGGAAGCTATCGCTGCTAAGAATGTTATGCTTCCTCTATCAGAACCCTCAATGCCAAGATCAACAGGACGTCGTCAGCTCTTTACACAACCACACCCCATACGTCATGCCACTACCAAAACAAAACGTCACAGTTCCAATAAATATGCCAAAGTTTGGAGTCAGGCATATGAAATGCACAGAGAGACATCTCTTCTGGCTGGAACTGCTTATCTACAAGAACTAGAGCAAGCATCTAAATTTTCTGAACATGCTAGGCATTTGAATGCCTGTTACCGTTATCCCTCAAATCAAATGAGGGGGAAAAACATCTCATCTTTGGGAGATCCAACAACAAAGACATTTAGTGAAAATATAAGCAAACTATCTTTGATTGACAGAAATTACCATGTACCTAATAAAATGAATCTAATTTCTTTTCTTCAACACGTGAAAGAGGAAGATGAAGGCTCCTTAGGGTATCCAGACTTGCTACTCTGGAAGCAGAAATTATCTTCTTCAAGACTTTGCTCTGAAGATGTTGCTGGGGACATATTTTCTATTGGTTGTCTCTTGGCTGAACTTCATCTTTCCAGGCCACTCTTTGATCCAATCTCATTGTCAATATACTTGGAAGATGGAACCTTTCCAGGATTTCTGCAGGATCTACCTCCTAATGTTAGATTACTTGTTGAAGCATGCATCCAAAAGGATTGGACGAGGAGGCCTTCTACCAAATTTCTTCTGGAATCACCTTATTTTCCAAAGAGTGTCAAGTCCTCCTACTTGTTTCTTGCTCCACTTCAGCTTGTAGCTAAAGACGAAACTCGTCTTCGTTATGCTGCAAATCTTGCAAAGCATGGAGCCCTCAGGGAAATGGGTGCATTCGCAACTGAAATGTGCACTACTTATTGCTTACCGCTTATAGTGAATGCTGTGAGTGATGTTGAAGCTGAATGGGCATATATGCTTCTGAAGGAATTCATGAAATGCTTAACAGTGCCAGCAACCACAGGTTATTTACGTTTAAAGGTTGCACTTCTACAAGATTCATTTGTGAGGGAAATATGGAATCAAGTTGGTAAACAAGCATACCTGGAAACTATTCATCCATTGGTCTTGTCAAACTTGTACAATTCTCCAGATAAAAGTTCAGCTGCCTCTGCTTCAGTGCTTCTAATCAGTTCTAGCGAGGAGCTTGGAGTACCTATTACCATCCATCAGACTATCTTGCCTCTTGTTCACTGCTTTGGGAAAGGACTATCTGCGGATGGCATTGATGTGCTGGTCAGAATTGGTGGCATTTTTGGGGAATTGTTTATTGTCAAACAGATGGTACCTTTACTCAAAAATGTTGTTCGTTCCTTCATTGATGTGTCATGCATGAATAAGCCCGATCCTGTCCAGAGTTGGACTGCTTTGGCACTTATTGATTGCATGATGACTTTAGATGGCCTTGTAGCTTTCCTGACAGAAGAGGTCATTGTAAAGCAGCTTCTTGAAGATCTAAGTTGCATACACATAGGGGTTCTTATGCAGAAACATATGGACATTGCAGTGCTTCAGATTGCTGCCTCTACTCTTTTTGGAATTTGTCAGAGGATTGGAGCAGATTTGACAGCATTACATATTCTTCCAAAACTTAAAGAACTGTTTGATGAGCTGGCTTTCTCCCAGGAAGTTTCTAAAGGTTCAACTACTGTTGGCAAAAACTTGAAGGCTAGCAAAATAAAAATTGGAGGGGACTTGCACATTGAAAGTCGTATGGATCTAGTGTGGGTGCTCTATCCTTCCTTTGCATCTCTTCTAGGGATAGAGAAACTTCGTCAATGCTGTGCTACTTGGTTGATTCTTGAACAGTATCTTCTACGTCATCATAATTGGAAGTGGGAATATGCAGGAGAATCATCAAAAAATGGTTCAGAAATTATTCTTGCTAGAAGACCTGTAACATCCCAAGGATTTACATCTGATTACAATCCTGCAAAGCTGTTGCTTAATGGAGTTGGATGGTCAATTCCACAATCCCAAGGAAGTAGAAGTGCCAAAAATTTGATTCCTCAAAGACGACCATTTAAAGTTCGTCAAAGTCCAGTAGTAGTGCATGAAGGAATGACATACCAAATGAACCAAGAACCCTGGTTTTGGTTCCCTAGTCCAGCCACCATCTGGGATGGGCCTGAATTTCTTGGGAGGGTGGGGATTCAGAAAGATGATCTTCCATGGAAGATCAGAGCATCTGTTATATACTCTATACGCGCACATCATGGAGCACTAAGGTCTCTGGCTGTTAACCAAGATGAATGCACTGTTTTTACTGCTGGAATTGGTCAAGGATACAAGGGAACTGTTCAGAAATGGGAATTGAGCCGAACTAACTGTTTGTCCGGCTATTATGGCCATGAGGAGGTTGTGAATGATATTTGCGTATTATCAAGTGGAAGAGTGGCATCTTGTGATGGAACAATTCACATTTGGAATAGCCAAACAGGGAAGCAAATATTAGTATTTGCTGAGTCGCAAACAGAATCTAGCCATCCGACAAGCCATCCATCCTCTGCATCAAAAATAAATAGTGACCAGGCAAATGTGCTGAATTTGAATACACTATCAAATGGAATATTGTCTAGTGCTTTCGATTCAAGTCTTTATACTTGTATGCATCAATTATACTCCACTGAAACTCTTGTAGTTGGCACTGGAAATGGTTCTCTGAGGTTCATTGATGTTTCTCGAGGCCAAAAGCTTCATATCTGGAGAGGCGAATCTACAGAATCTAGTTTTCCTTCACTTATTTCTGCCATCTGCTCTACTGGCTCTGACAAGATGCAAGCAGCGGGGCTAAGCTCTGGTCACTGTAAATTATTTGATGCTAAGAGTGGAAATGTCATTAGCTCTTGGCGAGCTCACGATGGATACGTGACAAAGTTGGCAGCACCTGAAGAACATCTGCTCATTTCCAGCTCTTTGGACAGAACTTTACGAGTCTGGGACTTAAGAATAGGTCATTCAGATGGTATATCCAGCTTCTCCATTTGGGGCCATGATGTTATTTCAATTTCCCGGAGTAGGATTGGGCTTCTCTCCTTGTCTAAATCTGTCAACGAAACAGATGGGCAGCACCACATTATCCCCCAGAGACTCTACGTTTCTGATAACGGTCAGAGAAGCTTGTCGGCGTTATCAAGTATTAGTATACTTCCATTCTCCCGATTGTTTCTCATTGGAACCGAAGATGGTTATCTGAGAATCTGTTGTTAA 4956 0.4084 MTELTFIFNTGEESVDGGRSMSESERGHEKWEESECFECLQLRIKSDFSEQVFFNYAISNSAFPFGSSAIVNISGTTDGEASGGQFILQYMPSRDKNCFINYVNVYSLDSGEITTGSGDPDIGGSKNNVIKGRITSSDESDCGKAFSGNTNCSHSGRFSCLRTITSLLPIAHVGNSSYSTFQKVSSDFLSGLIEDHVLNSLYLFIEEKGSGWDSINFLGLIGLPSFEEDVLPGSLRHPNIAPVLAIFETSDHVNVVLPKTPYNLESILHFNPNSLKSDWNRRFLIYQLLSALSYVHGLGVSHGNICPSNIMLTDSLWCWLRLWSEPVLESNLTSQESESVNSEPARIGCCNVGCHSHGLYADLKLSPTIDWHACFQQWWRGEISNFEYLLILNRLAGRRWGDHTFHPVMPWVIDFSSKPDDNCDVGWRDLSKSKWRLAKGDEQLDFTYSTSEIPHHVSDECLSELAVCSYKARRLPLSVLRMAVRSVYEPNEYPSTMQRLYQWTPDECIPEFYCDAQIFISIHDGMADLAVPSWAESPENFIKLHFDALESDRVSFQLHHWIDITFGYKMSGQEAIAAKNVMLPLSEPSMPRSTGRRQLFTQPHPIRHATTKTKRHSSNKYAKVWSQAYEMHRETSLLAGTAYLQELEQASKFSEHARHLNACYRYPSNQMRGKNISSLGDPTTKTFSENISKLSLIDRNYHVPNKMNLISFLQHVKEEDEGSLGYPDLLLWKQKLSSSRLCSEDVAGDIFSIGCLLAELHLSRPLFDPISLSIYLEDGTFPGFLQDLPPNVRLLVEACIQKDWTRRPSTKFLLESPYFPKSVKSSYLFLAPLQLVAKDETRLRYAANLAKHGALREMGAFATEMCTTYCLPLIVNAVSDVEAEWAYMLLKEFMKCLTVPATTGYLRLKVALLQDSFVREIWNQVGKQAYLETIHPLVLSNLYNSPDKSSAASASVLLISSSEELGVPITIHQTILPLVHCFGKGLSADGIDVLVRIGGIFGELFIVKQMVPLLKNVVRSFIDVSCMNKPDPVQSWTALALIDCMMTLDGLVAFLTEEVIVKQLLEDLSCIHIGVLMQKHMDIAVLQIAASTLFGICQRIGADLTALHILPKLKELFDELAFSQEVSKGSTTVGKNLKASKIKIGGDLHIESRMDLVWVLYPSFASLLGIEKLRQCCATWLILEQYLLRHHNWKWEYAGESSKNGSEIILARRPVTSQGFTSDYNPAKLLLNGVGWSIPQSQGSRSAKNLIPQRRPFKVRQSPVVVHEGMTYQMNQEPWFWFPSPATIWDGPEFLGRVGIQKDDLPWKIRASVIYSIRAHHGALRSLAVNQDECTVFTAGIGQGYKGTVQKWELSRTNCLSGYYGHEEVVNDICVLSSGRVASCDGTIHIWNSQTGKQILVFAESQTESSHPTSHPSSASKINSDQANVLNLNTLSNGILSSAFDSSLYTCMHQLYSTETLVVGTGNGSLRFIDVSRGQKLHIWRGESTESSFPSLISAICSTGSDKMQAAGLSSGHCKLFDAKSGNVISSWRAHDGYVTKLAAPEEHLLISSSLDRTLRVWDLRIGHSDGISSFSIWGHDVISISRSRIGLLSLSKSVNETDGQHHIIPQRLYVSDNGQRSLSALSSISILPFSRLFLIGTEDGYLRICC 1651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g03157 1651 Gene3D BEACH domain 367 614 IPR036372 -
Vimu3g03157 1651 Pfam Protein kinase domain 233 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g03157 1651 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1532 1565 - -
Vimu3g03157 1651 SMART WD40_4 1310 1353 IPR001680 GO:0005515
Vimu3g03157 1651 SMART WD40_4 1525 1563 IPR001680 GO:0005515
Vimu3g03157 1651 SMART WD40_4 1425 1474 IPR001680 GO:0005515
Vimu3g03157 1651 SMART WD40_4 1616 1651 IPR001680 GO:0005515
Vimu3g03157 1651 SMART WD40_4 1356 1392 IPR001680 GO:0005515
Vimu3g03157 1651 ProSiteProfiles Trp-Asp (WD) repeats profile. 1532 1565 IPR001680 GO:0005515
Vimu3g03157 1651 ProSiteProfiles BEACH domain profile. 363 632 IPR000409 -
Vimu3g03157 1651 SUPERFAMILY WD40 repeat-like 1313 1649 IPR036322 GO:0005515
Vimu3g03157 1651 SUPERFAMILY Protein kinase-like (PK-like) 745 820 IPR011009 -
Vimu3g03157 1651 ProSitePatterns Trp-Asp (WD) repeats signature. 1550 1564 IPR019775 -
Vimu3g03157 1651 Gene3D - 1492 1651 IPR015943 GO:0005515
Vimu3g03157 1651 SUPERFAMILY BEACH domain 358 607 IPR036372 -
Vimu3g03157 1651 Gene3D Transferase(Phosphotransferase) domain 1 228 326 - -
Vimu3g03157 1651 SMART Beach_2 375 607 IPR000409 -
Vimu3g03157 1651 SUPERFAMILY Protein kinase-like (PK-like) 234 320 IPR011009 -
Vimu3g03157 1651 CDD Beach 376 607 IPR000409 -
Vimu3g03157 1651 PANTHER GH12955P 32 1651 - -
Vimu3g03157 1651 Gene3D - 1288 1485 IPR015943 GO:0005515
Vimu3g03157 1651 Pfam WD domain, G-beta repeat 1358 1392 IPR001680 GO:0005515
Vimu3g03157 1651 Pfam WD domain, G-beta repeat 1527 1563 IPR001680 GO:0005515
Vimu3g03157 1651 Gene3D Transferase(Phosphotransferase) domain 1 727 827 - -
Vimu3g03157 1651 Pfam Beige/BEACH domain 376 589 IPR000409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g03157 Vimu-Chr3 45333292 45343243 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDKL-Cr Vimu3g03157 Beach 7.1e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g03157 K17601 - gmx:100809116 2921.34